| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3100 |
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| Symbol | mexF |
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| ID | 1184757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3484393 |
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| End bp | 3487584 |
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| Gene Length | 3192 bp |
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| Protein Length | 1063 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394458 |
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| Product | multidrug efflux RND transporter MexF |
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| Protein accession | NP_792892 |
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| Protein GI | 28870273 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0635013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTCT CCAAATTCTT TATTTCACGG CCGATCTTCG CCGCAGTGCT GTCGCTGCTG
ATCCTGATCG CCGGTGCAAT CTCGCTGTTC CAGTTGCCGA TCAGTGAATA CCCGGAAGTC
GTGCCGCCGA CCGTAGTGGT ACGCGCCAGC TTCCCCGGCG CCAACCCCAA GGTGATCGGC
GAAACCGTCG CTTCGCCGCT GGAACAGGCC ATCACCGGTG TCGAGGGCAT GCTCTACATG
TCGTCCCAGG CCACCGCCGA CGGCAAACTG ACCCTGACCA TCACCTTTGC GCTGGGCACC
GAGCTGGACA ACGCTCAAGT GCAGGTGCAG AACCGCGTGA CACGGACCGA GCCCAAGCTG
CCCGAGGAAG TCACGCGTAT CGGCATTACC GTGGACAAGG CCTCTCCCGA CCTGACCATG
GTTGTTCACT TGACCTCGCC GGACCAGCGC TACGACATGC TGTACCTGTC CAACTACGCC
GTGCTCAACA TCAAGGATGA GCTGGCGCGA CTGGGCGGTG TCGGTGATGT GCAGTTGTTC
GGCATGGGCG ACTACTCGCT GCGTGTCTGG CTCGATCCGA ACAAGACCGC CTCACGCAAC
CTGACCGCCA CCGACGTGGT CAACGCAATT CGCGAACAAA ACCGTCAGGT CGCCGCCGGC
CAGTTGGGCT CGCCGCCTTC GCCGAATGCC ACCAGTTTTC AGATGTCGAT CAACACCCAG
GGCCGTCTGG TCAGTGAGGA AGAGTTTGAA AACGTCGTGG TCCGCGCCGG GCCAGACGGA
GAAATTACCC GCCTGAAGGA CGTCGCACGT ATCGAGCTGG GTTCCAGTCA GTACGCCCTG
CGCTCGCTGC TCAATAACCA GCCTGCCGTG GCAATGCCGA TCTTTCAGCG CCCAGGCTCC
AACGCCATCG ACATTTCCAA CGATGTGCGG GCACGGATGG CCGAGCTGAA AAAAGGCTTC
CCCGAAGGCA TGGACTACAG CATCGTCTAT GACCCGACCA TCTTTGTGCG CGGCTCCATC
GAGGCGGTGA TCCATACACT GTTCGAAGCA CTGATTCTGG TGGTGCTGGT GGTGGTGCTG
TTCCTGCAGA CCTGGCGCGC CTCGATCATC CCGCTGGTGG CTGTACCGGT GTCACTGATC
GGCACCTTCG CTGTGATGCA CATGTTCGGC TTCTCGCTGA ACGCGCTGTC TTTGTTCGGC
CTGGTACTGG CCATCGGCAT CGTGGTAGAC GACGCGATTG TGGTGGTCGA GAACGTCGAA
CGTAACATCG AGCTGGGGCT TGAACCGGTC GAGGCGACGC ACAAGGCCAT GGCTGAAGTG
ACGGGGCCGA TCATTGCCAC GGCGCTGGTG TTGTGCGCGG TGTTTGTACC GGCAGCGTTT
ATTTCTGGCC TTACCGGGCA GTTTTATAAA CAGTTCGCAC TGACCATTGC CATCTCGACG
GTCATCTCGG CGTTCAACTC GCTGACCCTG TCGCCGGCGC TGGCCGCGGT ATTGCTTAAA
GCTCACGATG CACCCAAGGA TCGCTTCTCG CGTTTCCTCG ATAAAATACT CGGAGGCTGG
CTGTTCCGCC CGTTCAACCG CTTCTTTGAA AAAGCCAGCC ACGGCTATGT GGGCACCGTC
GCACGGGTCA TTCGCAGCAG CGGCATCGCG TTGCTGGTCT ATGCGGGGCT GATGGTTCTG
ACCTGGCTGG GCTTCGCCAG CACGCCAACC GGTTTTGTGC CAAGCCAGGA CAAGCAATAT
CTGGTGGCAT TTGCCCAGTT GCCGGACGCC GCGAGCCTGG ACCGCACCGA GGACGTGATC
AAGCGCATGT CGGAGCTGGC ACTCAAGCAG CCCGGTGTGG AAAACGCGAT TGCCTTCCCG
GGTCTGTCGA TCAACGGCTT CACCAACAGC CCGAACAACG GCGTGGTATT CGTCGCCCTC
AAGCCTTTCG ATGAACGCAA GGACCCAAGC CTGTCGGCCA ACGCCATCGC CGGTGCCCTG
AACGGCCAGT TTGCGTCGAT TCAGGAAGCC TACATGGCGA TCTTCCCGCC ACCGCCGGTA
CAAGGGCTGG GCACCATTGG CGGCTTCCGC TTGCAGATCG AAGACCGTGG CAACCTGGGT
TACGACGAGC TGTACAAGGA AACCCAGAAC ATCATCACCA AAAGCCGCAG CGTGCCGGAA
CTGGCCGGGT TGTTCACCAG CTACACAGTG AACGTGCCGC AGGTCGATGC CGCGATTGAC
CGAGAGAAGG CCAAGACGCA TGGCGTGGCC GTCAGCGATA TCTTCGACAC CCTGCAGGTG
TACCTGGGCT CGCTGTATGC CAACGACTTC AACCGTTTCG GCCGCACTTA TCAGGTCAAC
GTCCAGGCTG AGCAGCAGTT CCGTCAGGAT GCCGATCAGA TCGGTCAGCT CAAGGTGCGC
AACAATCTGG GAGAAATGAT ACCGCTGGCA ACCTTCGTCA AGGTCAGTGA CACCGCAGGT
CCCGACCGCG TGATGCACTA CAACGGTTTC ATTACCGCCG AGATCAACGG CGCAGCCGCA
CCGGGCTTCA GCTCTGGCCA GGCGCAGACC GCGGTGGAAA AGCTGCTGCG TGAAGAACTG
CCCAACGGCA TGGTCTACGA ATGGACCGAC CTGACCTATC AGCAGATTCT CTCGGGCAAC
ACCGCGCTGT TCGTCTTCCC GCTCTGCGTG TTGCTGGCGT TCCTGGTGCT GGCCGCTCAG
TACGAAAGCT GGAGCCTGCC GCTGGCGGTG ATCCTGATCG TACCGATGAC CCTGCTCTCG
GCCATTGCCG GGGTGATCAT TGCCGGTAGC GACAACAACA TCTTCACCCA GATCGGCCTG
ATCGTACTGG TGGGGCTTGC GTGCAAGAAC GCGATTCTGA TCGTCGAGTT CGCCAAGGAC
AAACAGGCCG AGGGCATGAG CCCGCTGGAT GCAGTGCTGG AAGCCTGCCG CCTGCGTCTG
CGTCCGATCC TGATGACCTC GTTTGCCTTC ATCATGGGTG TGGTGCCACT GGTACTTTCC
AGCGGTGCCG GTGCCGAGAT GCGTCACGCG ATGGGGGTCG CGGTGTTCTC CGGGATGCTC
GGCGTCACCT TCTTCGGCTT GCTGCTGACG CCGGTGTTCT ACGTGCTGAT CCGTAACTAC
GTTGGACGTC AAGAGGCCCG CAAGGCCGCC AAGGCGCAAA AACTGCAAAA CCTGCCTGCG
GAGATGCATT GA
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| Protein sequence | MNFSKFFISR PIFAAVLSLL ILIAGAISLF QLPISEYPEV VPPTVVVRAS FPGANPKVIG
ETVASPLEQA ITGVEGMLYM SSQATADGKL TLTITFALGT ELDNAQVQVQ NRVTRTEPKL
PEEVTRIGIT VDKASPDLTM VVHLTSPDQR YDMLYLSNYA VLNIKDELAR LGGVGDVQLF
GMGDYSLRVW LDPNKTASRN LTATDVVNAI REQNRQVAAG QLGSPPSPNA TSFQMSINTQ
GRLVSEEEFE NVVVRAGPDG EITRLKDVAR IELGSSQYAL RSLLNNQPAV AMPIFQRPGS
NAIDISNDVR ARMAELKKGF PEGMDYSIVY DPTIFVRGSI EAVIHTLFEA LILVVLVVVL
FLQTWRASII PLVAVPVSLI GTFAVMHMFG FSLNALSLFG LVLAIGIVVD DAIVVVENVE
RNIELGLEPV EATHKAMAEV TGPIIATALV LCAVFVPAAF ISGLTGQFYK QFALTIAIST
VISAFNSLTL SPALAAVLLK AHDAPKDRFS RFLDKILGGW LFRPFNRFFE KASHGYVGTV
ARVIRSSGIA LLVYAGLMVL TWLGFASTPT GFVPSQDKQY LVAFAQLPDA ASLDRTEDVI
KRMSELALKQ PGVENAIAFP GLSINGFTNS PNNGVVFVAL KPFDERKDPS LSANAIAGAL
NGQFASIQEA YMAIFPPPPV QGLGTIGGFR LQIEDRGNLG YDELYKETQN IITKSRSVPE
LAGLFTSYTV NVPQVDAAID REKAKTHGVA VSDIFDTLQV YLGSLYANDF NRFGRTYQVN
VQAEQQFRQD ADQIGQLKVR NNLGEMIPLA TFVKVSDTAG PDRVMHYNGF ITAEINGAAA
PGFSSGQAQT AVEKLLREEL PNGMVYEWTD LTYQQILSGN TALFVFPLCV LLAFLVLAAQ
YESWSLPLAV ILIVPMTLLS AIAGVIIAGS DNNIFTQIGL IVLVGLACKN AILIVEFAKD
KQAEGMSPLD AVLEACRLRL RPILMTSFAF IMGVVPLVLS SGAGAEMRHA MGVAVFSGML
GVTFFGLLLT PVFYVLIRNY VGRQEARKAA KAQKLQNLPA EMH
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