Gene PSPTO_3060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3060 
Symbol 
ID1184717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp3440841 
End bp3441878 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content54% 
IMG OID637394420 
Productglycine betaine/L-proline ABC transporter, ATP-binding protein 
Protein accessionNP_792854 
Protein GI28870235 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4175] ABC-type proline/glycine betaine transport system, ATPase component 
TIGRFAM ID[TIGR01186] glycine betaine/L-proline transport ATP binding subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.201516 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCATG GCGACGAAAT ACTCTCAGTC AACAACATTT TCAAGGTCTT TGGTGCTCAG 
CCAAAGGTCG CAATGGATAT GCTCAAACGC GGTGCCGGCA AAGACGAGAT ATTCAGCAAG 
ACGGGCCGGG TGGTCGGTGT GTTTGACGCT ACATTTTCGG TAAAACGCGG AGAAATCTTC 
GTGATCATGG GCTTGTCGGG TTCTGGCAAG TCCACCATGG TGCGTCTGTT CAACCGTCTC 
ATTGAACCCA CGTCTGGAAC CATTCATCTC AATGGCAAGG AAATTACCGG CCTTTCGGAT 
GAGGCGTTAC TGGATGTACG CCGTAAGGAA ATGAGCATGG TGTTTCAGTC ATTTGCGCTC 
ATGCCGCACT TGACGGTCAT TGATAACGCC GCTTTCGGGC TCGAAGTTTC AGGTGTCGCC 
GAGCAGGAGC GACACGCGCG TGCTCGCGAA GCGCTCGAAC AGGTCGGTCT GGCTGGGCAT 
GAACACAGTT ACCCGCATCA GTTGTCTGGC GGTATGCAGC AACGAGTCGG CCTGGCTCGC 
GCATTGGCCA ACGACCCGGC CATCCTGCTG ATGGATGAAG CCTTCTCTGC ACTGGACCCG 
CTCATTCGCC ACGAGATGCA GGGCGAACTG ATACGCCTTC AGGCCGAGCA GCATCGCACC 
ATCATTTTCA TCTCCCATGA CATCGAAGAA GCTATTCGTA TTGGCCATCG CATCGCGATC 
ATGGAAGGCG GACGCATCGT GCAGATCGGT TCCCCTCAGG AGCTGCTGTG CAACCCGGTC 
AACGATTACG TCAAAGCATT TTTTCAAGGC TTTGACCGCT CGAAAATTCT TCGGGCGGGC 
GACGTGGCGA CGGTCTGTGC AGAGCATCCT TACGACGCGC ATGCATCCAG ACCGACACTG 
CAATCCGATA CCCCTCTGCA AGACATCTTT CACATTGTTG CCGATGCCGT GCATCCGGTC 
GCTGTTGTGG ATCGACACGG TGTGTTCAAA GGCACTATTT CCAAGAGTCT GTTGCTGCAG 
ACAATGAGTC GTCATTGA
 
Protein sequence
MSHGDEILSV NNIFKVFGAQ PKVAMDMLKR GAGKDEIFSK TGRVVGVFDA TFSVKRGEIF 
VIMGLSGSGK STMVRLFNRL IEPTSGTIHL NGKEITGLSD EALLDVRRKE MSMVFQSFAL 
MPHLTVIDNA AFGLEVSGVA EQERHARARE ALEQVGLAGH EHSYPHQLSG GMQQRVGLAR 
ALANDPAILL MDEAFSALDP LIRHEMQGEL IRLQAEQHRT IIFISHDIEE AIRIGHRIAI 
MEGGRIVQIG SPQELLCNPV NDYVKAFFQG FDRSKILRAG DVATVCAEHP YDAHASRPTL 
QSDTPLQDIF HIVADAVHPV AVVDRHGVFK GTISKSLLLQ TMSRH