Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3049 |
Symbol | |
ID | 1184706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3429981 |
End bp | 3430907 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637394409 |
Product | sugar ABC transporter, periplasmic sugar-binding, putative |
Protein accession | NP_792843 |
Protein GI | 28870224 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00910782 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTCGCT GCACATTGCT TTTTGCCTCT CTGCTACTTG TCTTAAGCCC ATGGGCCACC GCCAGCTATC GCATCGGCGT GAGCATCGCA AGGGTCGACG ATAACTTCAT GACTTACGTG CGCAGCGGCG TGGAGGACGC GGCAAAAAAA GAAAACGTAC AGGTCCAGTT CGAGGACGCG CAAGGCGACG TGGTGCGCCA GCTCAATCAG GTTCAGGGAT TTATCAATCA AAAAGTCGAC GCAATTATCG TCCTGCCCGT GGACACCGCC GCCACCGCCA ACCTGACCCG CGCTGCCGTT GAGGCGAAGA CGCCGCTGGT CTACGTCAAC CGCCATCCGG ACGAGCGCGT CCTGCCTAAA GGCGTGGTTA CCGTGGCGTC CAATGACATT GAGGCCGGGC AGCTGCAAAT GCGCTACCTG GCGGAAAAAC TAGGGGGCAA AGGTACCCTC GCCATCATCA TGGGTGACCT TGCGCAAAAC GCTACGCATG ACCGCACCGA AGGCGTCAAG CAGGTGCTCA AAGACTATCC CGGCATCAAG ATAGTCGAAC AACAAAGCGC CGAATGGCAA CGCAACAAAG GCATGGACCT GACCAGCAAC TGGCTGCTGG CAGGCACCAA GTTTGACGCC ATCGTCGCCA ACAACGACGA GATGGCTATC GGTGCCGCCA TGGCCCTGCA GCAGGCTGGC AAAACCAAGG GCGAAATTGC AATTGTCGGC ATTGATGGTC TGCCCGACGG CCTGGCCGCG ATTAAACGCG GAATGCTGGT CGCCTCAGTC TTTCAGGACC CCAAAGCCCA AGCCACCGCC GCAGTACAGG CGTCCATTAA AATGATCAAA GGTGAGCCAG TCGAAACGGA TGTCTGGGTG CCCTTTCAGT TGATTACGCC CGAACAAGTG GCCGTGTTTG AGCAGCATTA TAAGTAG
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Protein sequence | MRRCTLLFAS LLLVLSPWAT ASYRIGVSIA RVDDNFMTYV RSGVEDAAKK ENVQVQFEDA QGDVVRQLNQ VQGFINQKVD AIIVLPVDTA ATANLTRAAV EAKTPLVYVN RHPDERVLPK GVVTVASNDI EAGQLQMRYL AEKLGGKGTL AIIMGDLAQN ATHDRTEGVK QVLKDYPGIK IVEQQSAEWQ RNKGMDLTSN WLLAGTKFDA IVANNDEMAI GAAMALQQAG KTKGEIAIVG IDGLPDGLAA IKRGMLVASV FQDPKAQATA AVQASIKMIK GEPVETDVWV PFQLITPEQV AVFEQHYK
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