Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3033 |
Symbol | |
ID | 1184690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3409902 |
End bp | 3411077 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394394 |
Product | twitching motility protein |
Protein accession | NP_792828 |
Protein GI | 28870209 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0402494 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATTATGG ATTTTCCGGC GTTGTTGAAG ATTCTGGCCA GTCAGGACGG ATCTGACCTT TATCTTTCTA CCGGAGCACC GCCGTGTGCC AAGTTCAACG GCGTGCTCAA GCCGCTGAGC AGCGAAACCC TCAAACCTGG CGAAGTGGCG GTGGTTGCCC AGGGGCTGAT GGACGAGGAG CAGAAGCTCG AGTTTGTCCG GGAACTGGAG ATGAACCTCG CGGTGTCATT GGCGGGCATC GGCCGGTTCC GGATCAATAT CTTCATGCAG CGCAACGAAG TGTCTATTGT CGCGCGTAAC ATCAAGCTGG ACATTCCGCG CTTTGAGGAC CTTTTCCTGC CGCCGGTGTT GCTTGACGTG ATCATGGAAA AACACGGTCT GGTGCTGTTT GTCGGCGCCA CCGGCTCGGG TAAATCGACC TCGCTGGCGG CGCTGATTGA TTACCGTAAC CGCAATGCCA GCGGGCACAT CATCACCATT GAGGACCCGG TCGAATTTAT CCATCGGCAC AAGAAATCCA TCGTCAATCA GCGTGAGGTC GGCGTCGACA CCCGCAGCTT TCGCGCGGCA CTGAAAAACA CTCTGCGTCA GGCCCCGGAT GTGATTCTGA TCGGCGAGAT CCGCGATCGC GAAACGATGG AGCACGCGCT GGCATTTGCC GACACCGGCC ACTTGGCGAT TTCGACCCTG CACGCCAATA ACGCCAACCA GGCGCTGGAC CGAATCATCA ACTTTTTCCC GGAAGAGCGG CGTGCGCAGC TGTTGCACGA CCTGGGCAAC AACCTCAAGG CGTTCGTGTC TCAGCGGCTG GTAAAGACGC CTGATGGAAA ACGGCGCGCG GCGGTGGAAG TGATGATGGG CACGCCGACC ATCCGCGACC TGATCCAGCG TAATGAGCTG ACTGAACTCA AGGGCATCAT GGAAAAGTCC GGCAGCCTCG GGATGCAGAC GTTCGATACC GCGCTGTTCA ACCTGGCCGT CGATGGCGCG ATCAGCGAGG AAGAAGCGTT GAAAAATGCC GATTCGCAAA ACAACGTTCG TCTGCGCCTC AAGCTGCACA GCGAGAACGG AGTGGCTAAC CTGACCACGC CGCCCCCGGC ACCGACCGGC AGCAGCACAG CCAGCACCGC CGAGTGGGGC CTGGTCGACG ATGACGAGCC GGGGCCGCAG GCGTAA
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Protein sequence | MIMDFPALLK ILASQDGSDL YLSTGAPPCA KFNGVLKPLS SETLKPGEVA VVAQGLMDEE QKLEFVRELE MNLAVSLAGI GRFRINIFMQ RNEVSIVARN IKLDIPRFED LFLPPVLLDV IMEKHGLVLF VGATGSGKST SLAALIDYRN RNASGHIITI EDPVEFIHRH KKSIVNQREV GVDTRSFRAA LKNTLRQAPD VILIGEIRDR ETMEHALAFA DTGHLAISTL HANNANQALD RIINFFPEER RAQLLHDLGN NLKAFVSQRL VKTPDGKRRA AVEVMMGTPT IRDLIQRNEL TELKGIMEKS GSLGMQTFDT ALFNLAVDGA ISEEEALKNA DSQNNVRLRL KLHSENGVAN LTTPPPAPTG SSTASTAEWG LVDDDEPGPQ A
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