| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2955 |
|---|
| Symbol | |
|---|
| ID | 1184609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3322024 |
|---|
| End bp | 3322977 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394315 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | NP_792752 |
|---|
| Protein GI | 28870133 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.012422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATC ATCTCGTCGT CGCCCTCATC TATAACCAGC TGTGTACCTT CGAATTTGGC
TGCACGGTTG AGGTATTTGC CCTCAAAAGA CCTGAACTGG GGGTCAGCTG GTACGAGTTT
GCAACCTTCC CGGTTGACGA CGGCCCGATC ACCGCGGCTG GCGGCATCAC CATCGTGCCG
ACCCCGGGTG AGGTACTGCT GGAAAACGCC GACACCATCA TCGTGCCGGG CTGGCGCGGG
GTGGAGTCCC AAGTTCCGCA ACGCCTGATC GAACAGCTTC AGGCCGCCCA TGCCCGTGGC
GCACGCATCT GCTCGATCTG CACCGGGGCG TTCGTGCTGG CGGCGGCGGG CCTGCTTGAC
GGGCATAAGG TCACGACTCA CTGGCGCTAC ACCGATTTGC TGGCAACCAT GTACCCGGGG
CTGAGTATTC AGCCCAACGA GTTGTATGTG GATCAGGGCA CTATTGTCAC CGCTGCGGGC
TCGGCGGCCG GGCTGGACAT GATGCTGCAT CTGGTACGCA ACGATCATGG CTCGCGAGTC
GCCAACATGG TGGCGCAGCG CATGGTCATC CCGCCGCACC GCGAAGGCGG GCAATCGCAA
TACGCCTCAA GGCAACTGGT GGCGGCCAGT GACGGCCCGA TTTCCAATCT CATGGACTGG
ATTCGCGGTG ATCTGCAACG CCCGCACACC ATCAAGGAAA TGGCCTCGCG AGCGTCGGTC
AGCACGCGCA CCCTGCACCG CAGCTTCATG GAAAGCACCG GGCTGACGCC TTATGACTGG
CTGCTCGGCG AGCGCGTGGC GTACGCCAAG GAACTGCTGG AGTCCTCCAA GCTGCGCCTC
AACGAAGTGG TGGACAGGGC CGGCTTTGGC TCGGAAGAGT CGTTTCGCCG ACACTTTCGC
AACCTGGTGG GTATCAGCCC GAGCAGTTAC CGCAAGCAGT TCGCCCGGAC CTGA
|
|---|
| Protein sequence | MKNHLVVALI YNQLCTFEFG CTVEVFALKR PELGVSWYEF ATFPVDDGPI TAAGGITIVP
TPGEVLLENA DTIIVPGWRG VESQVPQRLI EQLQAAHARG ARICSICTGA FVLAAAGLLD
GHKVTTHWRY TDLLATMYPG LSIQPNELYV DQGTIVTAAG SAAGLDMMLH LVRNDHGSRV
ANMVAQRMVI PPHREGGQSQ YASRQLVAAS DGPISNLMDW IRGDLQRPHT IKEMASRASV
STRTLHRSFM ESTGLTPYDW LLGERVAYAK ELLESSKLRL NEVVDRAGFG SEESFRRHFR
NLVGISPSSY RKQFART
|
|---|
| |