Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2936 |
Symbol | |
ID | 1184590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3300087 |
End bp | 3300842 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394297 |
Product | LamB/YcsF family protein |
Protein accession | NP_792734 |
Protein GI | 28870115 |
COG category | [R] General function prediction only |
COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.597487 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGATAG ATTTCAACTC GGACATGGGT GAAAGCTTCG GCGCATGGAC CATTGGCGAC GGCGTTGATA CCGAACTGAT GGCCTTCATC AGTTCTGCCA ATATCGCCAC CGGCTTTCAC GCAGGCGACC CAAGCACCAT GCGTCGCACC ATTGAACAGG CCAAACGCCT GGGCGTGGCC ATTGGCGCGC ATCCGGGGTT CCGTGATCTG GTGGGCTTTG GTCGCCGGCA TATCAACGCG CCCGCTCAGG AGCTGGTCGA CGACATGCTT TACCAACTGG GTGCATTGCG CGAGCTGGCC CGTGTTCAGG GCGTGCCCTT GCAGCACTTC AAACCCCACG GAGCCTTGTA TATGCACCTG GCCCGTGACG AAGAGGCTGC CCGGTTGCTG GTGGAAAACC TTCAGCGTCT GGAGCCTGAT TTGCTGCTTT ACTGCATGCC CGGCTCGGTG ATCTGCAACG TGGCTCAGGA ACTGGGGCAA CCGGTGGTGC GCGAGTTTTA CGCCGATCGC GCTTACGACC TCAGCGGTTC TATCGTCTTT ACCCGCAACG TACGCGCCCA TGACCCGGCT GAGGTGGCCG CGCGTGTGAT TCGCGCCTGC CAGCAGGGGC TGGTGCGCAC GGTCGAAGGT GACGATCTGG CCATCCAGTT CGATTCCATC TGCCTGCACA GCGACACACC GGGCGCGCTG GCCCTTGCAC AGGCGACCCG TCAGGCGCTG GATGGTGCCG GAATAGAAGT GCGCACGCCA CGTTAG
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Protein sequence | MQIDFNSDMG ESFGAWTIGD GVDTELMAFI SSANIATGFH AGDPSTMRRT IEQAKRLGVA IGAHPGFRDL VGFGRRHINA PAQELVDDML YQLGALRELA RVQGVPLQHF KPHGALYMHL ARDEEAARLL VENLQRLEPD LLLYCMPGSV ICNVAQELGQ PVVREFYADR AYDLSGSIVF TRNVRAHDPA EVAARVIRAC QQGLVRTVEG DDLAIQFDSI CLHSDTPGAL ALAQATRQAL DGAGIEVRTP R
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