| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2907 |
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| Symbol | |
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| ID | 1184561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3270583 |
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| End bp | 3272553 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394268 |
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| Product | GGDEF domain/EAL domain protein |
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| Protein accession | NP_792705 |
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| Protein GI | 28870086 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAAAA AACTAGCGGG TGCCTTGCGC ACCCTGATGT CTGTGCCTGC TGATAACCCC
AGGCTGCTTG AGGCCCAATA CGTCGCGTTG TCCCGACAAC TGCCTTTGAT GTACTTCGTG
TTGCTGGTCA ACACCTGGGC GCTGGCCTTC ACCCACCGCG AAACTGCGCC TGTGTGGCTG
ACGCTGCTGG TGCCGGTGTT GCTCACGGTC ATTTGCGGCA TTCGTGCCCG CAAGTGGCTG
CTCACGGTTA ACCGTCCGCC GCCCGCTGCG GCAACCATTC TGGCGACCTT GCGCGGCACC
AACAGCCTGG CCGGCGTCAT AGCCGCCGGT TTTGCTGCGT GGTCACTGTC GCTTTACCCC
TATGGCGGCC CCTATGCTCA GGCGCATGTG GCGTTTTTCA TGGGTATTAC GGTGATCGTC
TGCATCTTCT GCATGATGCA CCTGCGGCCT GCGGCGTTGA CCACGGCGGT GGTGGTCAAC
ACGGCGTTCG TTATTTTCTT CGCCTCGACG CACAACCTCA TCTTTATCGC CACGGCGGTG
AACATCGTTC TGGTGTCGAT CGGCATGCTG ATCATTCTCC ATCACCAGTA CCGCGACTTC
ACCAGCCTGG TGGACGTTCA GGTGCGCACC GAGCAACTGA GCAATGAAAA TCTGTTGCTG
GCCAATAAGG ACAGCCTGAC CGGCCTGCCA AACCGTCGGC AGTTCTTTCA GACCCTGGAC
GCCGCCATGA GCGAGGCGCT GGCACTGCGT AGCAAGCTGG CAGTGGGGGT GCTGGATCTG
GACGGGTTCA AACCGGTCAA TGACCTTTAT GGCCACCGTA CTGGCGACCG TCTGCTGATG
CTGGTCGCCG AACGCCTGAA CAGTGTGGCG AGCAACACGG TGCATGTGTC CCGACTGGGC
GGCGACGAGT TCGCGCTGGT CATCAAGGGT GACATCAGCA ACGAGGCGTT GCTTGCACTC
GGCAAGCACC TGTGCGACCT GATGCACGAA AGTTTCGAAC TGTCCGACAT GCCGATCCAG
ATCGGCGCGA CGCTGGGCAT GGCAACGTTT CCGGCCAGCG CCGATAACGC GACTCAGCTG
TTTGAATTTG CCGATTACGC GCTGTATCAA GGCAAGAATC ATAACCCGGG AACTACCTGC
CTGTTCTCTG CCAGCCACCG TGAGCAGTTG CACACCGATG GTGTGACCGA GCAGGCATTG
CGCCGAGCCA ATCTTGAGAC CGAGTTTCAT GTGATGTTTC AGCCGATCAT TGAAAGCTGT
ACATGCGAAA CGGTGGCTTT CGAGGCGCTG GCGCGTTGGA ACAGCCCGGA ACTGGGGGCG
GTGTCTCCGG CGCATTTCAT TCCGATTGCC GAGCGAATCG GCATGATCAA CAAACTGACG
GCGCCCTTGC TGACTCACGC GCTGCAGATG GCCTTATCGT GGCCGGCGCC CATCAGGCTG
TCGTTCAACC TGTCGGCCCA CGACTGCGCG ACGTGGGAGA GCGTCAGCAC GATTGTCGAA
ATCATCGAAA ACAGTGGGTT CGATGCCTCG CGGCTTGATC TGGAAATCAC CGAAACGGCC
GTGATGCAGG ATATCGCCCA GGTACAGCAG GCCATTGCGC AGTTCCGGCA ACTGGGGTGT
GGCATCTCGC TGGACGACTT TGGCACCGGT TTTTCAAGCC TGAGCCAGTT GCATGCGCTG
GCGCTGACCA AGCTCAAGAT TGACCGCAGC TTTGTAACCG GCGTGCATGA CAACCCGGCC
AGTTACAAGA TCGTCAAATC GCTGGTTGCC TTGAGCCTGG ATATGTCACT TGGCTGTGTG
ATCGAAGGCG TCGAGACCCA GGATGAGCTC AACGCACTGA CCAGCCTCGG TTGCACGATG
GTGCAGGGCT ACTTCTACAG CCCGCCGATC AGTTTTGCCG AGACGCTGGC CTGGCTTGAA
ACGCCGGATC ACGAGCGTGC GTTCGGTTAT GCAGCCGCGT GCCGTATCTG A
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| Protein sequence | MLKKLAGALR TLMSVPADNP RLLEAQYVAL SRQLPLMYFV LLVNTWALAF THRETAPVWL
TLLVPVLLTV ICGIRARKWL LTVNRPPPAA ATILATLRGT NSLAGVIAAG FAAWSLSLYP
YGGPYAQAHV AFFMGITVIV CIFCMMHLRP AALTTAVVVN TAFVIFFAST HNLIFIATAV
NIVLVSIGML IILHHQYRDF TSLVDVQVRT EQLSNENLLL ANKDSLTGLP NRRQFFQTLD
AAMSEALALR SKLAVGVLDL DGFKPVNDLY GHRTGDRLLM LVAERLNSVA SNTVHVSRLG
GDEFALVIKG DISNEALLAL GKHLCDLMHE SFELSDMPIQ IGATLGMATF PASADNATQL
FEFADYALYQ GKNHNPGTTC LFSASHREQL HTDGVTEQAL RRANLETEFH VMFQPIIESC
TCETVAFEAL ARWNSPELGA VSPAHFIPIA ERIGMINKLT APLLTHALQM ALSWPAPIRL
SFNLSAHDCA TWESVSTIVE IIENSGFDAS RLDLEITETA VMQDIAQVQQ AIAQFRQLGC
GISLDDFGTG FSSLSQLHAL ALTKLKIDRS FVTGVHDNPA SYKIVKSLVA LSLDMSLGCV
IEGVETQDEL NALTSLGCTM VQGYFYSPPI SFAETLAWLE TPDHERAFGY AAACRI
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