| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2788 |
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| Symbol | |
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| ID | 1184442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3106934 |
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| End bp | 3107944 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394156 |
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| Product | ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | NP_792593 |
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| Protein GI | 28869974 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0498257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACAAC CCCATATTTC TTTTCGGTCG CAGACACCAC GTGCCCTGTT TCGCTGGATG
GCCACGGCCT GCGCAGTGGC TTTGAGCTTG CAAGGCGCGG CACACGCAGC TGAAAAGCCA
CCTTCCGAAG TGCGCCTGGA TTACGCTTAC TACTCGCCGG TCAGCCTGGC GCTCAAGCAT
TTCGGCTGGC TGGAAAAAGC GCTGCCGGAC GCCAGGGTCA CGTGGGTCCT GAGCCAGGGC
AGTAACCGGT CGCTGGAATA CCTGAACAGC GGCAGCGTCG ACTTTGCGTC GTCCGCCAGC
CTGTCCGCCG TATTGGCCCG GGCCAACGGC AGCCCGATAA AGTCTGTCTA CGTCTATAGC
CGCGCAGAGT GGACGGCGCT GGTAGTGCGC AAGGATTCGA CCCTGCAATC GGTTGCCGAG
CTCAAAGGCA AGAAAATCGC TGCCACCAAG GGCACAGATC CTTACCTGTT CACCTTGCGC
GCCCTGCAAA AGGCCGGTTT GAAAAAGGAT GATGTCGAGT TGTTGCACCT GCAGCATCCC
GACGGTCGTA CAGCACTGGA GAAAGGTGAC GTGGATGCGT GGGCCGGGCT TGACCCGCAC
ATGGCGGCCA GTGAAATCCA GTCCGGCGCT CGTTTGCTTT ACCGCAACAA GGATTTCAAC
AGCTATGGCG TGCTGAGCGT CACCGAAACC TACGCCAAGG AACACCCGCA GGCGATCAAA
ACGGTATTGA CCGCCTACGA AAAAGCTCGT GAATGGGCCG TGAAAAACCC TGATGAGCTG
GCCAGATTGC TGGCTACCGA ATCAGGCCTG CCGCTGGACG TTGCCAAACT GCAATTGTCC
CGCACAGACC TGAGCAACCC GCAATTGAGC GCGAAAGACG TAGAAGCGTC CAAGTCCGCA
GCGCCGATTC TGGTGTCTGA AGACCTGGTG CGCAAAGGCG TGAACGTCGA GCAGGTCATC
GACCAACTGA TCACGCCGGA CTTCTCCAAA GCCGTGATCG CAGCCCCATG A
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| Protein sequence | MPQPHISFRS QTPRALFRWM ATACAVALSL QGAAHAAEKP PSEVRLDYAY YSPVSLALKH
FGWLEKALPD ARVTWVLSQG SNRSLEYLNS GSVDFASSAS LSAVLARANG SPIKSVYVYS
RAEWTALVVR KDSTLQSVAE LKGKKIAATK GTDPYLFTLR ALQKAGLKKD DVELLHLQHP
DGRTALEKGD VDAWAGLDPH MAASEIQSGA RLLYRNKDFN SYGVLSVTET YAKEHPQAIK
TVLTAYEKAR EWAVKNPDEL ARLLATESGL PLDVAKLQLS RTDLSNPQLS AKDVEASKSA
APILVSEDLV RKGVNVEQVI DQLITPDFSK AVIAAP
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