| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2756 |
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| Symbol | |
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| ID | 1184410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3069220 |
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| End bp | 3070692 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637394124 |
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| Product | outer membrane efflux protein |
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| Protein accession | NP_792561 |
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| Protein GI | 28869942 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.158368 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGAC GCCTGGCCTT CACATCCCGC CCGCTGGGGC TGCTTCGTCC GCTCGGGCTG
GGGCTCTGTA TCGCGCTGCT GAGCGCGTGT GCGGTCGGGC CGGATTACCA GAAGCCTTCA
TCGGCCGCGC CTGCACAGTT CAAGGCCGCT GCGGGCTGGC GCGCAGCCAC GCCGAGCGAC
GCGATGGCCA AGGGCGCATG GTGGGAGGTG TATGGCGACG CCCAGTTGAA TACGCTGGTC
GCACGGCTCA ATACCTCCAA CCAGACGGTC GCTCAATACG ACGCGCAGTA CCGACAGGCC
CAGGCACTGG TGCGCAGCTC CCGAGGCGCA TTCTTTCCGA CACTGGACCT GACCACCGGC
AAGACCCGGT CAGGACAGGG CGCTGGCACC TCCAGTAGCG GTACGTCCAA CACCAGCGCA
TCGGGTATTC GCAACAGTTA CAACGCGCAA CTGGGCGTCA GTTGGGAGGC CGATGTCTGG
GGCAAGCTGC GTCGCGGTCT GGAGGCCGAC ACGGCCAATG CTCAGGCAAG CCTGGCGGAT
CTGGCGGCGA TGCGCTTGAG CCTGCAATCG GAACTGGTGC AGAACTACAT GCAGTTGCGG
GTGATCGACG AGCAGAAGCG CCTGCTGGAA TCCACCGTGG ACGCCTACCA GCGCTCGCTG
ACCCTGACGC GCAATCAATA CCGCGCCGGT ATTGCCGGAA CTGATGCGGT GGCCCAGGCG
CAGACACAGC TGAAAAGCAC CCAGGCCGAC CTGATCGATC TGGTCTGGCA ACGTGCGCAA
TTCGAGAATG CCATTGCCGT ACTGATGGGC GTGGCACCCG CTGACTTCAA TCTGCCGCCC
ACCACCACGA TCCCGCAACT GCCGCAGATT CCGCCCGGCG TGCCTTCGCA ATTGCTGGAG
CGTCGGCCTG ACATCGCCGC CGCAGAGCGC TCGGTCATGG GCGCCAATGC CAATATCGGG
GTCGCCAAGG CGGCGTACTA CCCGGACTTC ACGTTGAGCA TGAGCGGCGG CTACAACAGC
AGCACCTTCG CCAACTGGAT CAGCCTGCCC AACCGTTTCT GGTCGGTAGG CCCGCAACTG
GCATTGACCC TGTTCGACGG CGGCAGGCGT TCGGCCGAGG TCGATCGTAC CGAGGCGCTG
TACGACCAGA CTGTCGCGCA GTACCGGCAG ACCGTGCTCA ATGGTTTCCA GGAAGTCGAG
AATTACCTCA TCCAGCTCAA GGTTTACGAA GAGGAGGCCG CTGTTCGTCA GGAAGCGCTG
GTGGCGGCGC GCGACTCGCT GCGCCTGACC AACAATCAGT ACAAGGCTGG GTTGATCGGC
TATCTGGACG TGGTCAACGT GCAGGCTACC GCGCTGAGCA ACGAGCGCAC GGTTCTGAAT
GTGCTGCAAA GCCGTTTGAT CGCCAGCGTT CAACTGATTG CCGCACTGGG CGGAGGCTGG
AATGCCGAGA CGGGTCTGAC GCTCAGGGAG TAA
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| Protein sequence | MTRRLAFTSR PLGLLRPLGL GLCIALLSAC AVGPDYQKPS SAAPAQFKAA AGWRAATPSD
AMAKGAWWEV YGDAQLNTLV ARLNTSNQTV AQYDAQYRQA QALVRSSRGA FFPTLDLTTG
KTRSGQGAGT SSSGTSNTSA SGIRNSYNAQ LGVSWEADVW GKLRRGLEAD TANAQASLAD
LAAMRLSLQS ELVQNYMQLR VIDEQKRLLE STVDAYQRSL TLTRNQYRAG IAGTDAVAQA
QTQLKSTQAD LIDLVWQRAQ FENAIAVLMG VAPADFNLPP TTTIPQLPQI PPGVPSQLLE
RRPDIAAAER SVMGANANIG VAKAAYYPDF TLSMSGGYNS STFANWISLP NRFWSVGPQL
ALTLFDGGRR SAEVDRTEAL YDQTVAQYRQ TVLNGFQEVE NYLIQLKVYE EEAAVRQEAL
VAARDSLRLT NNQYKAGLIG YLDVVNVQAT ALSNERTVLN VLQSRLIASV QLIAALGGGW
NAETGLTLRE
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