| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2755 |
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| Symbol | |
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| ID | 1184409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3066116 |
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| End bp | 3069223 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394123 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | NP_792560 |
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| Protein GI | 28869941 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTCT CTGCGCCCTT TATCCGTCGT CCGGTCGCCA CCGTCCTGCT GAGCCTGGCG
ATCATGCTGC TGGGCGCGGT CAGCTTTCGC CTGTTGCCTG TCGCGCCTCT GCCGAACATG
GATTTCCCGG TCATCGTGGT GTCGGCAAGC CTGGCCGGGG CCAGCCCGGA GGTGATGGCG
TCTACTGTGG CGACGCCGCT GGAACGTTCG TTGGGCAGCA TTGCCGGGGT CAACACCATG
ACCAGCAATT CGAGCCAGGG CAGCACGCGG ATCATTCTGC AGTTCGATCT GAACCGCGAC
ATCAATGGCG CGGCACGGGA AGTGCAGGCG GCCATCAATG CGTCACGCAA TCTGCTGCCC
AGCGGCATGC GCAGCATGCC GACCTACAAG AAGGTCAACC CGTCCCAGGC ACCGATCATG
GTCCTGTCGA TGACTTCGAC CGTGCTGGAA AAGGGCCAGC TTTACGATTT GGCCTCCACC
ATTCTGTCGC AAAGCCTGTC ACAGGTTTCC GGGGTCGGCG AAGTGCAGAT CGGCGGCAGC
TCGCTGCCCG CGGTGCGTAT CGAGCTCGAG CCACAGATGC TGTCCCAGTA CGGCGTGTCG
CTTGACGACG TACGTACCGC GATCACCAAT GCCAACGTGC GACGGCCCAA GGGCTTCGTC
GAGGACGACC AGCATAACTG GCAGGTTCAG GCCAACGATC AGTTGGAGAG CGCCAAGGAT
TACGCGCCGT TGATTATCCG CTATCAGGAC GGCGCAACGT TGCGTCTCAA GGATGTCGCC
AAGGTCAGCG ATGCGGTGGA AGACCGCTAC AACAGCGGTT TTTACAACAA TGACCGCGCT
GTGCTGCTGG TCGTCAACCG TCAGGCCGGC GCCAACATCA TCGAAACCGT GGCGCAGATC
AAGGCGCAGT TGCCGGCGCT GCGTGCAGTG CTGCCGGCTA GCGTGAGTCT GAATATTGCG
ATGGACCGTT CGCCGGTGAT CAAGGCGACC CTGCACGAAG CCGAAATGAC CCTGTTGATT
GCCGTGGTTC TGGTGGTGAT GGTGGTGTTC CTGTTTCTCG GCAGCTTTCG TGCCTCGCTG
ATCCCCACCC TGGCGGTGCC GGTATCGCTG GTCGGCACGT TTGCGATCAT GCACCTGTTC
GGTTTTTCCC TGAACAATCT GTCGCTGATG GCACTGATCC TCGCCACCGG GCTGGTGGTA
GACGACGCCA TCGTGGTGCT GGAAAACATC TCCCGGCACA TCCACAACGG CCTCGACCCC
ATGAAAGCGG CCTTTCTGGG GGCCAAAGAA GTGGGCTTTA CCTTGCTGTC GATGAACGTC
TCGCTGGTGG CGGTGTTCAT TTCCATCCTG TTCATGGGCG GCCTGGTAGA AAGTCTGTTT
CGCGAGTTTT CCATCACTTT GTCGGTGTCT ATTGTTGTCT CGCTGATCGT CTCCCTGACC
CTCACTCCGA TGTTGTGCGC GCGCTGGCTC AAGCCCCACG TTGCCGAAAA GGACAATGCC
TTTCAGCGCT GGAGCGAGCG GGTCAACGAC CGGATGGTTG CCGCCTATGA TCGTTCGCTG
GGCTGGGTCC TGCGGCACCG GCGGCTGACG GTGCTGAGCC TGCTGGTGAC TGTCATCGTC
AATGTCGCGC TGTACGTGGT GGTGCCCAAG ACTTTTCTGC CGCAGCAGGA CACAGGGCAA
CTGATGGGTT TTGTGCGCGG TGACGACGGC CTGTCGTTCT CGGTGATGCA GCCGAAAATG
GAGATCTTTC GCCGTTCGGT GCTGGCAGAC CCCGCCGTGG AAAGTGTCGC AGGCTTTATC
GGCGGCAGCG GTGGCACCAA CAACGCCTTC ATGATCGTGC GCCTCAAGCC GATTGCCGAG
CGCAAGCTGT CCGCGGAAAA AGTGGTCGAG CGCCTGCGCA AGAACATGCC GCAAGTGCCG
GGAGGCAGGC TGTTTCTTGC CCCGGATCAG GACCTGCAAC TGGGCGGAGG CCGCGAGCAG
ACCAGTTCGC AGTATCAGTA CATCGTGCAG AGCGCTGACT TGGCCAGCCT GCGCCTGTGG
TATCCGAAGA TTGTCGCGGC GCTCAAGTCG ATCCCGGAAC TGACCGCCAT TGATGCGCGG
GAAGGGCGCG GCGCGCAGCA AGTGACGCTG GTGGTCAACC GCGACACGGC CAAGCGCCTG
GGCATCGACA TGAACATGGT CACGGCGGTG CTCAACAATG CCTATAGCCA GCGTCAGGTT
TCGACCATCT ACGACAGCCT GAACCAGTAC AAGGTGGTGA TGGAGGTCAA CCCGAAATAT
GCTCAGGACC CGGTCACGCT GGAGCAGGTC CAGTTGATTA CCGCCGACGG CCAGCGTGTA
CCGCTGTCGA GCATCGCGCA TTATGAGCGC AGTCTGGCGA ACGACCGGGT GTCGCATGAC
GGCCAGTTCG CGGCTGAAAA CATCTCGTTC GATCTGGCCG AGGGTGCCAG CCTCGACAAG
GCAACGGTCG CCATCGAACG TGCGATTGCC GCCATCGGCC TGCCATCCGA CATCATTTCC
AAGATGGCCG GGACGGCCAA TGCTTTCGCA TCGACCCAAA AAGGCCAGCC GTGGATGATT
CTCGGCTCGC TGCTGGCGGT TTATCTGGTG CTGGGGATTC TCTATGAGAG TTACATTCAC
CCGCTGACGA TTCTGTCGAC CTTGCCCTCG GCAGGTGTCG GGGCATTGCT GACGATCTAT
GTGCTGGGCA GCGAATTCAG CCTGATTTCC CTGTTGGGGC TGTTCCTGCT GATCGGGTTG
GTGAAGAAGA ACGCAATCAT GATGATCGAC CTGGCTCTGC ACCTGGAGCG CGAGCAGGGC
ATGACGCCCG AGGAGTCGAT CCGCAGCGCG TGCCTGCAAC GCCTGCGGCC TATTCTGATG
ACCACCATGG CGGCGATCCT CGGCGCCTTG CCGCTGCTGC TAAGCACTGC CGAAGGTGCC
GAGATGCGCA AGCCATTGGG CCTGACCATC ATCGGCGGCC TGATTTTCAG CCAGGTCCTG
ACCCTTTACA CCACCCCGGT GGTCTACCTT TATCTCGACC GCCTGCGCCA TCGTTTCAAC
AAATGGCGCG GCGTGCGTAC CGATGCTGCT CTGGAAACTT CGTTATGA
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| Protein sequence | MNLSAPFIRR PVATVLLSLA IMLLGAVSFR LLPVAPLPNM DFPVIVVSAS LAGASPEVMA
STVATPLERS LGSIAGVNTM TSNSSQGSTR IILQFDLNRD INGAAREVQA AINASRNLLP
SGMRSMPTYK KVNPSQAPIM VLSMTSTVLE KGQLYDLAST ILSQSLSQVS GVGEVQIGGS
SLPAVRIELE PQMLSQYGVS LDDVRTAITN ANVRRPKGFV EDDQHNWQVQ ANDQLESAKD
YAPLIIRYQD GATLRLKDVA KVSDAVEDRY NSGFYNNDRA VLLVVNRQAG ANIIETVAQI
KAQLPALRAV LPASVSLNIA MDRSPVIKAT LHEAEMTLLI AVVLVVMVVF LFLGSFRASL
IPTLAVPVSL VGTFAIMHLF GFSLNNLSLM ALILATGLVV DDAIVVLENI SRHIHNGLDP
MKAAFLGAKE VGFTLLSMNV SLVAVFISIL FMGGLVESLF REFSITLSVS IVVSLIVSLT
LTPMLCARWL KPHVAEKDNA FQRWSERVND RMVAAYDRSL GWVLRHRRLT VLSLLVTVIV
NVALYVVVPK TFLPQQDTGQ LMGFVRGDDG LSFSVMQPKM EIFRRSVLAD PAVESVAGFI
GGSGGTNNAF MIVRLKPIAE RKLSAEKVVE RLRKNMPQVP GGRLFLAPDQ DLQLGGGREQ
TSSQYQYIVQ SADLASLRLW YPKIVAALKS IPELTAIDAR EGRGAQQVTL VVNRDTAKRL
GIDMNMVTAV LNNAYSQRQV STIYDSLNQY KVVMEVNPKY AQDPVTLEQV QLITADGQRV
PLSSIAHYER SLANDRVSHD GQFAAENISF DLAEGASLDK ATVAIERAIA AIGLPSDIIS
KMAGTANAFA STQKGQPWMI LGSLLAVYLV LGILYESYIH PLTILSTLPS AGVGALLTIY
VLGSEFSLIS LLGLFLLIGL VKKNAIMMID LALHLEREQG MTPEESIRSA CLQRLRPILM
TTMAAILGAL PLLLSTAEGA EMRKPLGLTI IGGLIFSQVL TLYTTPVVYL YLDRLRHRFN
KWRGVRTDAA LETSL
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