Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2705 |
Symbol | |
ID | 1184359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3000944 |
End bp | 3001777 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394074 |
Product | mannitol ABC transporter, permease protein |
Protein accession | NP_792511 |
Protein GI | 28869892 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00559467 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGACCC TTAAACAATC GCGTCGTTTA CAAAGCCTGC TGCTCGGGAC CTTGTCTTGG CTGATCGCCG CCCTGGTGTT CTTCCCGATC TTCTGGATGG TGCTGACCAG CTTCAAGACC GAGATCGACG CGTTTGCGAC ACCGCCGCAG TTGTTCTTCA CCCCGACCCT GGAAAACTAC CTGCACATTC AGGAACGCAG CGATTACTTT CACTTTGCCT GGAACTCGGT GCTGATTTCC TTCAGCGCCA CGGCGCTGGC CATGCTGATC GCCATCCCTG CGGCGTATTC CATGGCATTT TTCGAGACCA AACGCACCAA AAGCACGCTG CTGTGGATGC TCTCGACCAA AATGCTGCCG CCAGTGGGCG TGCTGATGCC GATCTACCTG CTGGCCAAGA CCTTCGGCCT GCTGGATTCG CGATTGGCGC TGATCATCAT CTACACGCTG ATCAATCTGC CGATCGTGGT GTGGATGATC TACACCTACT TCAAGGACAT TCCCGGCGAA ATCCTCGAAG CCTCGCGCTT GGACGGCGCC AGCACCCGGC AGGAGATCTT TCGCGTGCTG ATACCGATCT GCAAGGGTGG TCTGGCATCC ACCGCGTTGC TGTCGCTGAT TCTGTGCTGG AACGAAGCGT TCTGGTCGCT GAACCTTACC TCGTCTGCCG CTGCGCCCCT TACCGCGCTG ATCGCGTCCT ACTCCAGCCC CGAAGGGCTG TTCTGGGCCA AGCTCTCGGC GGTCTCGACC CTGGCGTGTG CGCCCATCCT GATTTTCGGC TGGATCAGTC AGAAACAACT GGTTCGCGGC CTGTCGTTCG GCGCTGTCAA ATAG
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Protein sequence | MMTLKQSRRL QSLLLGTLSW LIAALVFFPI FWMVLTSFKT EIDAFATPPQ LFFTPTLENY LHIQERSDYF HFAWNSVLIS FSATALAMLI AIPAAYSMAF FETKRTKSTL LWMLSTKMLP PVGVLMPIYL LAKTFGLLDS RLALIIIYTL INLPIVVWMI YTYFKDIPGE ILEASRLDGA STRQEIFRVL IPICKGGLAS TALLSLILCW NEAFWSLNLT SSAAAPLTAL IASYSSPEGL FWAKLSAVST LACAPILIFG WISQKQLVRG LSFGAVK
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