| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2699 |
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| Symbol | |
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| ID | 1184353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2992163 |
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| End bp | 2994622 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394069 |
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| Product | GAF domain/GGDEF domain/EAL domain protein |
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| Protein accession | NP_792506 |
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| Protein GI | 28869887 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0182626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTCTATG AAATCAGCCT TCTGGCCAGT TCGACCCTTG ATCGCGGCGC ATTTTTACGG
GGCATTCATG AGCAATTAGG TACGCTGATC GATGCCGAGA ACTTTTACGT GGCGCTTTAC
GACCAGCAGA GCGGCAAGAT CACCTACCCA TATTACATCG ATCGGTTCGA CGACGAAGCG
ATGGCGCACG AAGCGTTCGA GTTCATCAAT ACCGATCGAA TCTCGCTGAC CGGGTATGTC
CTGAGCAGCG GGCAGCCCAT GTTTCTCAAT GCGTCCTGTA TCGAGCAGGC CAAGGTTGAC
GGGCGTTTTT TCTGGGTGGG ACGTCTCCCC GAGTTCTGGA TGGGGGCGCC CTTGAAGAAC
GCCTCGGATG AAGTGTTCGG CATGGTGGCG ATGCAGGTCT ACGACGTGTC CCGGGTCTAC
AGCGCTCAGG ACCGCGCCTT GTTTGCCGTG GTGTCGCGGC ATGTGGCAAT GGCGCTGGAC
CGCCTGTTGC GCCGCACGGA CCTGGAGCAG ATCGTGGCGC TGCGCACGCA ACAGCTGTCG
GCCGCCAACG ACGCGTTGCG CCAGGAAGTG AAAGATCGCG AGCGCGCCGA GCACTTGCAA
AGCGCCCTGT TCCAGATCGC TGCGCTGTCC AGCCAGCCCG GTGACATGAA CGAACTGTTT
CGTAGCCTGC ACATGATTGT TGGTGAACTG CTGGTGGCGC TCAACTTCTA CATCGCGCTA
TACGACGGCG CCACCGGCGA AGTGACCTTT CCTTACTACA TCGACGAACA CCAGCACACA
CCACCGCGAT CACGGCGCGG GCAACGTGGC TTTACCGAAT ACGTGATCGG CCAGCGGCGG
CCGTGCCTGA TCGATTACGA CGACGCCCGC AGGCTGGAGA GCCTCGGGGA AATCGAAGTG
CAGAGAGACG CCGGTCGATC GTCCTCCTGG CTGGGCATTC CATTGTTCGA CAGCGGGCAG
GTGCGTGGCG TACTGGTGGT GCAGAGTTAT TCCAAGGATG TCAGCTATAC CCTGCGCGAT
CAGGAACTGC TGACCTTTGT GTCACGCCAT ATCGACACGG CGTTGTCCCG TCGCAGCGCC
GCCGAAGCGA TTCACACCGC CAACGTACTG CTCGAGGCGC GGGTTCGTGA CCGTACCCGC
GAGCTGGATC AGGCCAATGC CAGGCTGCAA CACGAAAACT CCCACGACTC GCTGACCGGT
TTGCCCAACC GCAGTCAGTT GCAACATCGT CTGCGACAGG CATGGCAGGA CTTCTGCCGA
AACGGCCGGC AACTGGTTGT CATGTTCATC GATCTGGATC GCTTCAAGAT GATCAACGAC
AGCCTCGGCC ATCATTGCGG CGATATCCTG CTGATTCAGG CTGCCGAGCG ATTGCGCAGT
TGCATGCGCG AAGAGGACCT GCTGGCCCGC CTGGGTGGCG ACGAATTTGC TGTGTTGAGC
ATCGATACGC CGTTGCAGAC CGGCACGTGC ATCGCCCAGC GAATACTGAC GGCGTTCGAG
CAGCCGTTCG TGATTGACGA CCATACGATT TTTTCTTCGT GCAGCATCGG TGTGGTGGGT
GCCGACAGCC AGTTTCATCA AGAGCCGGCA GACCTGCTGC GCGATGCCGA TACGGCCATG
TACCGAGTCA AGAATGGCGG CCGTGACAGC TTCGCAGTGT TCAATCAAGC GCTGCGCCGG
GAGGTTTCGG ATCAGGTCGA GCAGGAAGGC GCGTTGCGCA CGGCTCTGAA ACGCACCGAT
CAACTGATCC CTTATTTTCA GCCAGTGATC TGTGTCAACA CCGGTGACCT GCTGGCGCTG
GAGGCGCTGA TTCGCTGGCG CATGCCCGAC GGGCGAATCA TCGCGCCGGA AAGTTTTTTG
CCAGCGCTGG AGGGGCTTCG TCTGATTGGT CGTCTGGACC TTTACATGCT CAAGCGGGTC
ATCACCATTC TCGCGCAACC CGAAAACGGC CATTGGCCGC CGGTGCATGT GAACTGCTCC
AGTTACAGCA TCACCCGTCC GGCATTCGCC GCTGAAGTGC TGGCCATGCT CGCCGAGCAC
AATGTCGCGC CCGGGCGTCT GTGTCTGGAG CTTACCGAAG GCGCGCTGGT GGCTGACCCG
GAGCAGGCGC GCCTGTCCAT GAAACAATTG GCCGAGCAAG GTATGTCGGT GATGCTGGAC
GATTTCGGCG CGGGGTTCTC TTCCCTCAGC TACGTGCATC AGTATCATTT CAGCGGTTTG
AAGATCGACA AGTCATTTAT CTTCGGCCTG GCCTCCAGCG TGCGCAGCCG GGCGATCGTT
CGCGCCATTG TGCGGATGGC CGAGTCACTT GACCTGACCG TGGTTGCCGA AGGCGTCGAA
GACCTCGAAA CGCTGGAGCT GCTGCGCGAG ATTGGCGCGA CCCAGGCCCA GGGCTACTAC
TTCTCGGCGC CCTTGCCGAT TGAGCAACTG GTGATCAGCG CGGGTCGTGC GGCAGGCTGA
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| Protein sequence | MLYEISLLAS STLDRGAFLR GIHEQLGTLI DAENFYVALY DQQSGKITYP YYIDRFDDEA
MAHEAFEFIN TDRISLTGYV LSSGQPMFLN ASCIEQAKVD GRFFWVGRLP EFWMGAPLKN
ASDEVFGMVA MQVYDVSRVY SAQDRALFAV VSRHVAMALD RLLRRTDLEQ IVALRTQQLS
AANDALRQEV KDRERAEHLQ SALFQIAALS SQPGDMNELF RSLHMIVGEL LVALNFYIAL
YDGATGEVTF PYYIDEHQHT PPRSRRGQRG FTEYVIGQRR PCLIDYDDAR RLESLGEIEV
QRDAGRSSSW LGIPLFDSGQ VRGVLVVQSY SKDVSYTLRD QELLTFVSRH IDTALSRRSA
AEAIHTANVL LEARVRDRTR ELDQANARLQ HENSHDSLTG LPNRSQLQHR LRQAWQDFCR
NGRQLVVMFI DLDRFKMIND SLGHHCGDIL LIQAAERLRS CMREEDLLAR LGGDEFAVLS
IDTPLQTGTC IAQRILTAFE QPFVIDDHTI FSSCSIGVVG ADSQFHQEPA DLLRDADTAM
YRVKNGGRDS FAVFNQALRR EVSDQVEQEG ALRTALKRTD QLIPYFQPVI CVNTGDLLAL
EALIRWRMPD GRIIAPESFL PALEGLRLIG RLDLYMLKRV ITILAQPENG HWPPVHVNCS
SYSITRPAFA AEVLAMLAEH NVAPGRLCLE LTEGALVADP EQARLSMKQL AEQGMSVMLD
DFGAGFSSLS YVHQYHFSGL KIDKSFIFGL ASSVRSRAIV RAIVRMAESL DLTVVAEGVE
DLETLELLRE IGATQAQGYY FSAPLPIEQL VISAGRAAG
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