Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2624 |
Symbol | |
ID | 1184276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2916314 |
End bp | 2917153 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637393994 |
Product | hypothetical protein |
Protein accession | NP_792433 |
Protein GI | 28869814 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00205381 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCTGCC TGGACTGTGA CGACCTTTTC GACACCTGGC GGCTGCAAGC GCGCTGGTTG TTAAGTCATG AAATTGACCC CAGCCAGGTC AGCTGGAAAT CCCCGGACGC CGCCGACCTG TTTGGCAGCG AAGAACAATA CCCCGAACAA TCCGGCCCGT TTCAGGCCCG CGTGCCGCTG GAGTTGCTGC AGTTGCTGCA AAGCACATCG CGCTATCGAG GCGAACAGCG CTGGAGTTTG CTGTACGAAG TGCTGTGGCG CGTCACTCAC GGTGACCGCA CGGCCATGAT GGCCGGCGAC AAACTGGGCA GCGAGCTGCA TCGACGGCTC AAGGCTGTAC GCCGCGAGGC GCATCACCTG CATGCTTTTT TGCGTTTTGT CGCATTGCCG CCGGCCGACA ACGATGCAGC GATCATGCGC CCGCAATACG TGGCCTGGCA TGAACCGGCC CACGATATTC TGCACAGTGC CAGCGAGCAC TTCATCGGCC GCATGGGCCA GCACCGCTGG ATGATTGCCA CACCACAAGA CGGCGTGTAT TACGACGGCA AGCAATTGAT CCACGAGCGC CGCTGCCCTG AAGCCTGGCA AACGATGGCC AGACAGGTCG AAGACCCGCA CGGTGAATTG TGGCTGACCT ACTACAGCCA CATCTTCAAC CCCGCCCGCC TCAATCCCAA GGTCATGGAA GGCCACTTCC CTTCGCGCTT CTGGAAAAAC CTGCCCGAAG GCTCGCTTAT CCCGGCACTC ATCACCCAGG CCCGCACGGG CAAACAACGC GACGGCCAGG CCAGCGATAT CGCTGCGCGA CGCGGCAAGA AGATTGCGCT CAGGGATTGA
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Protein sequence | MICLDCDDLF DTWRLQARWL LSHEIDPSQV SWKSPDAADL FGSEEQYPEQ SGPFQARVPL ELLQLLQSTS RYRGEQRWSL LYEVLWRVTH GDRTAMMAGD KLGSELHRRL KAVRREAHHL HAFLRFVALP PADNDAAIMR PQYVAWHEPA HDILHSASEH FIGRMGQHRW MIATPQDGVY YDGKQLIHER RCPEAWQTMA RQVEDPHGEL WLTYYSHIFN PARLNPKVME GHFPSRFWKN LPEGSLIPAL ITQARTGKQR DGQASDIAAR RGKKIALRD
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