Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2608 |
Symbol | |
ID | 1184260 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2900350 |
End bp | 2900955 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637393978 |
Product | Sco1/SenC family protein |
Protein accession | NP_792417 |
Protein GI | 28869798 |
COG category | [R] General function prediction only |
COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00462141 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACGTACC GACCGACCCG CCGCGAGGTG GTCACAGGCC TCTCGTTGCT GAGCCTTGGC CTGCTGACTG GCTGCGGCAA TTCCAATGCC TTGCCGTTCA AGCATGGCAA GGACATGAGC AACGAGATTG TTGGCCGCAA CTTCCGGCTT AAGGATTCGC AAGGCAACGT CAAGACGCTT TCGAGTTTTC GCGGCCTGAT GCCGATGATT TTCTTCGGAT TTACCCAATG CCCGGCCATT TGCCCGACGG CGCTGGCGCG CGCAGCGCAG ATTAGAAAGC TGATGGGCGA GGAGGGCAAG ACGCTCCAGG TGGTGTTCAT CACTCTGGAC CCGGAGCGCG ATACGCCTGA TGTGATCGAC GCCTACGTAA AGGCTTTCGA TCCGACCTTC GTCGCCTTGT CCGGTACGCT TGAAGAAACC GTCGCGACGG CCAAGGAGTT CGGCGTGTTT TTCGAGAAAG TCCCGCTGGG CGATACCTAC ACGATTTCCC ACACCGCCAC CAGTTACGTC TACGACACCC GTGGCGTCCT GCGTCTGGGC TTGTCGCACA GACTGTCCGC CCCACAATGC ACCGAAGATC TGCTCACTTT GATGGAAGTA TGCTGA
|
Protein sequence | MTYRPTRREV VTGLSLLSLG LLTGCGNSNA LPFKHGKDMS NEIVGRNFRL KDSQGNVKTL SSFRGLMPMI FFGFTQCPAI CPTALARAAQ IRKLMGEEGK TLQVVFITLD PERDTPDVID AYVKAFDPTF VALSGTLEET VATAKEFGVF FEKVPLGDTY TISHTATSYV YDTRGVLRLG LSHRLSAPQC TEDLLTLMEV C
|
| |