Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2517 |
Symbol | |
ID | 1184169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2779927 |
End bp | 2781276 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637393890 |
Product | sodium/hydrogen exchanger family protein |
Protein accession | NP_792329 |
Protein GI | 28869710 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.224345 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTTA TTGTCTGCAT GAGCGTGCTG GGCGTGCTGT TGATGCTGCT GGCGCTCACC TCGTCCTATC TGCGCTGGAT GCCGGTCACC ACCTCGGCGG TGTGCCTGGC CTTCGGCTTC GGTATCGGCC CGCTGGGGCT GGATATCATC AACCTGGACT TCAAGCAATC CCGCGAGTGG CTGGAATGCC TGACCGAAGT CGCGGTGCTG TTTTCGCTGT TCGGGACCGG CATCAAGTTG CGCCTGCCGC TGAACTGCAA AGCCTGGCAT TCGGCGTACT GGCTGGCCGG CCCGGTGATG CTGGCGACCA TTGCCGGCGT CAGCGTTGCG GCACATTACA TTTTCGCTAT TGATTGGGGC GTGGCGCTGC TGCTCGGCGC GATGCTGTCG CCGACCGACC CGGTGCTGGC CGGGATGGTG CAGGTCAACA GCGCGCAGGA TCAGGACCGC TTGCGCTTTG GCTTGTCCGG CGAAGCGGGT CTCAACGATG GCACAGCATT TCCGTTCGTG ATCTTTGCCA TGCTTTACCT GAGTTCAGGC GGCGTGACGG GCGACTGGGC GCAGCACTGG TTGCTCAAGG ACCTGATCTG GGCGGTTCCG GCCGGGTTGC TGATTGGTTT TGGCATGGGT CGCGGCGTCG GGCACCTGAT GATTTTCCTG CGCATCAAAA ATGCCGACAG CACCACCTCG CCCAATGACT TTCTGGCACT GGCGCTCATC GCACTGGCCT ATGTGGTTGC CGAGGGCTTC GGTGCCTTTG GCTTTCTCTC GGTGTTTGCC GCAGGCTTCG GCTTGCGCCA GGCCGAAATG CGCGTCACCC GCTCCGAGTT GCCTTCGGAG CACGTCGCCC AGCCTGTGCT CGGCCACATG ACCGCCGCGT TGGACCAAGG CACCGTTGCC AAGGCCGATG ACCTGAGCGA TTCGCAACTG GCCGCCGGGG TGATGATGGG CGATATGCTG GCGTTCGGCA GCCTGGTGGA GCGCGCAATG GAAGTGTTGC TGATTACCTT GCTGGGCGCG GCCTTGGCAT CTTACTGGGA CTGGCGCGCC ATCGGCCTTG GGCTGGCGCT GTTCTGCGTT ATTCGCCCGG CAAGTGTGTG GCTGCTGGTC AGTCAAAAGT TGCTCAATGC CAGACAAAAG GCGTTGGTGG GCTGGTTCGG CATTCGCGGC ATCGGCAGCC TGTATTACCT GTGCTTTGCC CTGTCACATG GCCTGGCCGA CGATGTCGGC AACGTCGTGA TCGGCATGAC GCTGTCGGTG GTGGCGCTGA GTATTCTGCT GCACGGCATC AGTATTCAGC CGCTGCTGGA GCGTTACGAG CGCAGCACAG CGGCCAATCC GGACAAATGA
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Protein sequence | MSFIVCMSVL GVLLMLLALT SSYLRWMPVT TSAVCLAFGF GIGPLGLDII NLDFKQSREW LECLTEVAVL FSLFGTGIKL RLPLNCKAWH SAYWLAGPVM LATIAGVSVA AHYIFAIDWG VALLLGAMLS PTDPVLAGMV QVNSAQDQDR LRFGLSGEAG LNDGTAFPFV IFAMLYLSSG GVTGDWAQHW LLKDLIWAVP AGLLIGFGMG RGVGHLMIFL RIKNADSTTS PNDFLALALI ALAYVVAEGF GAFGFLSVFA AGFGLRQAEM RVTRSELPSE HVAQPVLGHM TAALDQGTVA KADDLSDSQL AAGVMMGDML AFGSLVERAM EVLLITLLGA ALASYWDWRA IGLGLALFCV IRPASVWLLV SQKLLNARQK ALVGWFGIRG IGSLYYLCFA LSHGLADDVG NVVIGMTLSV VALSILLHGI SIQPLLERYE RSTAANPDK
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