Gene PSPTO_2496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2496 
Symbol 
ID1184148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2760925 
End bp2762343 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content59% 
IMG OID637393869 
Productmajor facilitator family transporter 
Protein accessionNP_792308 
Protein GI28869689 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.206768 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCCAT CACCTCAAAC CGACGACGCT ACAGCCGCGC CGCTTCGGGC TGCGTTCATC 
TCGGCTCGCA TCGACAGGCT GCCGGCGGTT GCCACCATCT GGCGGTTGGT TGCCCTGCTG
TCAATCGCCG GTTTTTTCGA GCTTTACGAT CTGTTCCAGA CGGCGTACAT CAGCCCCGGC
CTGGTTCGCG ACGGGATCTT TGCCACGGGC AGCCAGGGTC TGTTTGGCTT TTCCGATCAG
GCGGCGTTTG CCTCGGCGAC CTTTCTCGGC CTGTTTTTCG GTGCCAGTCT GCTCAGCCCG
ATTGCCGACC GTTACGGTCG CCGCGCCATC TTTACCTTCG CGTTGATCTG GTACACCGTC
GCGACGGTGA TCATGGGCCT GCAAACCTCG GCGCTGGGCG TGATTGGTAT GCGTTTTATA
GTAGGCATTG GCCTCGGGGT CGAACTGGTC ACCATCGACA CTTACCTGTC GGAATTGGTA
CCCAAACGCA TACGCAGTTC GGCGTTTGCC TTCGCGTTTT TTATCCAGTT TTTATCGGTC
CCCAGCGTTG CGCTGATGTC GTGGTGGCTG GTGCCTCAGG CACCGTTCGG TTTTTCTGGC
TGGCGCTGGG TGGTGATCGG CAGTGCCGTG TTCGCCCTGT TTGTCTGGTG GCTGCGCTCG
GCGCTGCCGG AATCACCTCG CTGGCTGGCG CAGCAGGGCC GCTTCGACGA AGCAGAACGG
ATCATGGATG GCATTGAGGC TCGCTGTATC AAAGAACACG GCAAGCCGCT GGATGAGCCA
CAACCGGACA GCGTCGCAAT CGAAGGCAAA GGCCGCTTCG CCGACATTTG GCAACCGCCC
TACCGCCGTC GTGCATTGAT GCTGATCGTG TTTCACGTCT TCCAGGCTAT CGGCTTTTTC
GGCTTCGGCA ACTGGCTACC TGCCCTGCTC TCCGGGCAAG GCCTCAGTGT TACGCACAGC
CTGGGTTATG CGTTTGTCAT CACGCTGGCC TATCCGCTGG GTCCGCTGTT GTTCGTGAAG
TTTGCCAATC GTTTTGAAAA CAAATGGCAG ATTGTCGGTT CAGCTCTGGG GGCGATGATC
TTCGGCAGCC TGTTTGCGTT TCAGACCAGC GCCGCGGGCC TGGTCTTGTG CGGCATCATG
ATCACGTTCT GCAATGCGTG GCTGAGTTTC AGTTACCACT CGTATCAGGG CGAGCTGTTC
CCGACCAACA TCCGTGCCCG CGCGGTGGGC TTCTGCTACT CGTTCAGCCG CCTGTCTACG
GTGTTCAGCA GCCTGTTGAT CGGGATTTTT CTCGACCACT TCGGCACGCC GGGGGTGCTC
GCCTTCATCG TCAGCAGCAT GCTGATCGTG ATGATCACCA TCGGCCGCTT CGGCCCTCGC
ACACGCAACC TGGCGCTGGA GCAGATAACC CATCGCTAA
 
Protein sequence
MNPSPQTDDA TAAPLRAAFI SARIDRLPAV ATIWRLVALL SIAGFFELYD LFQTAYISPG 
LVRDGIFATG SQGLFGFSDQ AAFASATFLG LFFGASLLSP IADRYGRRAI FTFALIWYTV
ATVIMGLQTS ALGVIGMRFI VGIGLGVELV TIDTYLSELV PKRIRSSAFA FAFFIQFLSV
PSVALMSWWL VPQAPFGFSG WRWVVIGSAV FALFVWWLRS ALPESPRWLA QQGRFDEAER
IMDGIEARCI KEHGKPLDEP QPDSVAIEGK GRFADIWQPP YRRRALMLIV FHVFQAIGFF
GFGNWLPALL SGQGLSVTHS LGYAFVITLA YPLGPLLFVK FANRFENKWQ IVGSALGAMI
FGSLFAFQTS AAGLVLCGIM ITFCNAWLSF SYHSYQGELF PTNIRARAVG FCYSFSRLST
VFSSLLIGIF LDHFGTPGVL AFIVSSMLIV MITIGRFGPR TRNLALEQIT HR