Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2478 |
Symbol | topB |
ID | 1184130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2736166 |
End bp | 2738154 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637393851 |
Product | DNA topoisomerase III |
Protein accession | NP_792290 |
Protein GI | 28869671 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGCTGT TTCTTTGCGA AAAACCTTCC CAGGCCAAGG ACATTGCGGC TGCGCTTGGC GCAACCCGCC GTGGCGATGG CTGCTGGGTC GGTGCCAGCG CAACCGTCAC CTGGTGCATC GGCCATTTGC TCGAAACCGC TCCGCCCGAT GCCTACGATG CGCGCTACAA ACGCTGGGTG CTGGAAGACC TGCCCATCGT GCCCGAGAAG TGGAAGATGC TGGTCAAACC CAGAACGGCC AGCCAGTTCA AGGCCGTCAA GCGGTTGCTG GGCGAAGCGA ACGAGCTGGT AATCGCCACC GACGCTGACC GTGAAGGCGA AATGATCGCC CGCGAACTGG TCGAGCATTG CCGCTATCGC GGACCGATTC AGCGTTTGTG GCTGTCGGCG CTGGATGACG CCTCCATTCG CAAGGCGCTG GCAGCGCTCA AGCCCGGCGC CGACACCTTC AGCCTGTATC ACTCGGCATT GGGCCGGTCC CGCGCAGACT GGCTGATCGG CATGAACATG AGTCGTCTGT TCACGTTGCT GGGTCGCCAA TCGGGCTACC AGGGCGTATT GCCAGTCGGC CGCGTGCAAA CCCCGACCCT GCGCCTGGTA GTGGACCGGG ATCGCAGCAT CGCAGATTTC GTGCCCGCGC CCTTCTGGGC CATCGACGTC AAACTGCTGC ACGAAAATCA GGCGTTCATC GCTCAATGGC GCGCTCCGTC GGACGCCTGT GACGATCAGG ATCGCTGCCT GAATCAGCCA CTTGCGCAAC AGGCTGCCGA CGCCATGCGC CATGCTGCCA GCGCACGGTT GGTCAAGCTG CGCACCGAGC GGATGCGCGA AGCCGCACCC TTGCCTTTCG ACCTAGGCAC CCTGCAGGAA ATATGCTCGA AAAAACTCGG CCTCGGCGCG CAGGAAACCC TTGATATCGC CCAGTCGCTG TATGAAACCC ACAAGGTCAT CACGTATCCG CGCAGCGATT GCGGCTACCT GCCGAACAGT CAGCATGGCG AAGCGGCGGG TATCATCACT GCGCTGGGCA AGACCGATCC CGCGCTGGCC GGCCTGCTGC CGCACCTAGA CCCGCAACGC CGCTCCCGCG CCTGGAACGA CGCAAAAGTC ACTGCTCACC ACGGCATTAT CCCCACCGCG GCGGTGCGCG GCGTCGAGCG CCTGATCGGC AAGCCGCGCG CGGTCTACAC CCTGATCAGG GCGCGCTATC TGGCGCAGTT TCTGCCCAAC CACGAATATG ACCGCACCCA GGCTGACTTC GACTGCGCAG GCCAGGCGCT GCGAGCGGTG GGCAAACAGA TCGTCGAGCC CGGCTGGAAA CGCGCCATGC CCGAAGCCCT GGCCCCGGCC AAAGGTCGCG AAGCGCCTGC GCCGCAGCCC TTGCCTGCGT TGTTTCAGGG CTGCGAATGC GCCGTCGCCG ACGTCATCCT CAAAGATCTC TGGACCCAGC CACCCAAGCC CTTCACCGAA GGCGACCTGA TCAAGGCCAT GAAAAACGTC GCCAAGCTGG TAGAAGACCC GCTGCTCAAG CAAAAACTCA AGGACACCAC CGGCATCGGC ACCGAAGCCA CTCGAGCGGG GATCATTCAG GGGCTGCTGG ACCGCGGCTA TCTGACCAAA CAAGGCAAGG CGTTGTGCGC CACGCCGGCA GCCTTCAGCC TGATCGACGC CGTCCCGCGC GCTATTGCCG ACCCCGGCAC CACGGCCATA TGGGAGCAGG CACTGGACAT GGTCCAGAGC GGCGAAATGA GCCTTGAAGA GTTCGTCGCC AAGCAGGCAG CGTGGATGAG CAAGCAGGTC AGCCGCTGTG TCGGCATGCG CATGACCATC AGCGGCCCGG CCAGCCCGGC AGGCGTTGCG CCGCCGTGGA AGAAAAAACG CAAGACCGCC AAGCGCGGGG CTGCGACCTC GACCAAGGCA GCGAACGCTG CCACAGGCAC CGCAGCGAAA AAGCCTCGGC GCGCCGCCAA ACCGACGGTC AAGGGCTGA
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Protein sequence | MRLFLCEKPS QAKDIAAALG ATRRGDGCWV GASATVTWCI GHLLETAPPD AYDARYKRWV LEDLPIVPEK WKMLVKPRTA SQFKAVKRLL GEANELVIAT DADREGEMIA RELVEHCRYR GPIQRLWLSA LDDASIRKAL AALKPGADTF SLYHSALGRS RADWLIGMNM SRLFTLLGRQ SGYQGVLPVG RVQTPTLRLV VDRDRSIADF VPAPFWAIDV KLLHENQAFI AQWRAPSDAC DDQDRCLNQP LAQQAADAMR HAASARLVKL RTERMREAAP LPFDLGTLQE ICSKKLGLGA QETLDIAQSL YETHKVITYP RSDCGYLPNS QHGEAAGIIT ALGKTDPALA GLLPHLDPQR RSRAWNDAKV TAHHGIIPTA AVRGVERLIG KPRAVYTLIR ARYLAQFLPN HEYDRTQADF DCAGQALRAV GKQIVEPGWK RAMPEALAPA KGREAPAPQP LPALFQGCEC AVADVILKDL WTQPPKPFTE GDLIKAMKNV AKLVEDPLLK QKLKDTTGIG TEATRAGIIQ GLLDRGYLTK QGKALCATPA AFSLIDAVPR AIADPGTTAI WEQALDMVQS GEMSLEEFVA KQAAWMSKQV SRCVGMRMTI SGPASPAGVA PPWKKKRKTA KRGAATSTKA ANAATGTAAK KPRRAAKPTV KG
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