| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2430 |
|---|
| Symbol | |
|---|
| ID | 1184082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2683108 |
|---|
| End bp | 2684091 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637393805 |
|---|
| Product | pyridoxal-phosphate dependent enzyme family protein |
|---|
| Protein accession | NP_792244 |
|---|
| Protein GI | 28869625 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0031] Cysteine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00735557 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTTTAT TTTTAAATTT CAGGTATGAA AACATGAATT CTATCGAGCT GGCCATAGGC
AATACGCCCA TGGTGGAACT GAAAAGTTTT GATCTGCCAC CAGGCATAAG GATTTTTGCA
AAGCTGGAGT TTTTGAATCC TGGTGGAAGT ATCAAGGATC GTGTCGTAAA CCATATATTT
AACGACGCTG AAGCCCGCGG ACTATTGTGC CGCGGTTCGA CAGTAATAGA AAACACATCG
GGCAATACCG GTGCCGCTAT CGCAATGCTG GCGGCCGCTA GAGGTTATCG CGTTATTCTC
ACCATGCCGG ATAAAGTCAG CAAAGAAAAA CAAGATACAC TCAGGGCTTT GGGCGCTGAA
GTCATTATGT GCCCAACGTC AGCCGCTCCG GATTCACCTG AGCATTATGT TCAGGTAGCG
AAGTCTTTAC ACGCCGATAC GCCCAACTCG TTCATGCTGC ATCAATATGA TAACCCTCTA
AATCCGGAAG CTCACAAGCT CACGACTGGT CCAGAGATTT GGCGAGACTT GAAGGGGGGT
ATCTCCGTAT TTGTGGCTGC TGGCAGCACG GGCGGTACAA TATCAGGCAT TTCACGTTAT
CTGAAAAGTC AGGACAAAAC TATCAGATCG GTGCTCCTGG ATCCCAAAGG ATCTATTTAT
TATAAATACT TTTACGAGGG CGTGATTGAT CCACTAGTGA TAGGCCCTTA CCAGGTTGAA
GGTGTGGGAG AAGATCATTT GGCCAAGTGT ATGGATTTTG AAATGATCGA CGACGTTATT
CAGTTTGATG ATGCTGCTGC CTTTGGAACA TGTAGGTTGC TCGCTCAAAA GGAAGGGTTG
CTGTGTGGGG GAAGTTCAGG GGCGAATGTC TGGGGATGCC TTCAAGTTGC AAAGCGTCTT
TCGTCCCCTG CAAATATCGT CACTGTGTTG CCAGACAGCG GAGTTAAGTA CCTGTCAAAA
ATATATAACT CGCCGTTTAC GTGA
|
|---|
| Protein sequence | MILFLNFRYE NMNSIELAIG NTPMVELKSF DLPPGIRIFA KLEFLNPGGS IKDRVVNHIF
NDAEARGLLC RGSTVIENTS GNTGAAIAML AAARGYRVIL TMPDKVSKEK QDTLRALGAE
VIMCPTSAAP DSPEHYVQVA KSLHADTPNS FMLHQYDNPL NPEAHKLTTG PEIWRDLKGG
ISVFVAAGST GGTISGISRY LKSQDKTIRS VLLDPKGSIY YKYFYEGVID PLVIGPYQVE
GVGEDHLAKC MDFEMIDDVI QFDDAAAFGT CRLLAQKEGL LCGGSSGANV WGCLQVAKRL
SSPANIVTVL PDSGVKYLSK IYNSPFT
|
|---|
| |