| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2343 |
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| Symbol | |
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| ID | 1183994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2596721 |
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| End bp | 2597977 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637393720 |
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| Product | outer membrane porin, OprD family |
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| Protein accession | NP_792160 |
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| Protein GI | 28869541 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTCGA ACGTCTCTTG CAAAATCGCT TGCGGCCTCT CTGCGGCCAT CGCCTCCACC
CTCGCCCCTG CATTGAGTCA CGCCGCCGGG TTCGTCGAAG ACGCCAAGGT CAATCTGAAC
CTACGCAATT TCTACATCAA CCGCAACTTC GTCGACCCGG CCAACGCGCA GAATTACGCC
GAGGAATGGA CGCAGAACTT CATTCTCGAC GCACGCTCCG GTTTTACCCA AGGCACCGTG
GGCTTTGGTG TCGATGCGCT GGGGCTTTAC TCGCTCAAAC TGGACGGCGG CAAAGGCACG
GGCGGCACAC AGCTGCTGCC GATTCACAGT GATGGACGCC CGGCCGACGA CTTCGGGCGT
CTGGCCGTGG CAGGCAAGGC GCGTTTCTCG AAAACCGAAT TGAAGGTCGG CGAATGGATG
CCGGTGTTGC CGATCCTGCG CTCCGATGAC GGCCGCTCGC TGCCGCAAAC CTTTCAGGGC
GGGCAGATCA CCTCCAAAGA GATCGACGGG CTGACCTTGT ACGGTGGCCA GTTCCGCGCC
AACAGCCCGC GCAACGACGC CAGCATGCAA GACATGTCCA TGACTGGCCG CGCCGCGTTC
ACCTTCGACC GCTTCAACTT CGGCGGCGGC GAGTATGTGT TCAACGAAAA ACGCACTCAG
GTTGGCGTGT GGTACGCCCA GCTTGAAGAC ATCTACCATC AGCAGTATTT CAACCTGCTA
CACAGTCAGC CGCTGGGCAG CTGGACGCTG GGAGCCAACC TCGGCTACTT CCAGGGCAAG
GATGATGGCC AGTCGCTGGC GGGTGATCTG GACAACAAGA CCTGGTCCGC CCTGCTCTCG
GCACGACACG GCGGCAACAC TTTTTACGTG GGCCTGCAGA AGGTCAGCGG CGACAGCGCG
TGGATGCGCG TCAACGGCAC CAGCGGTGGC ACACTGGCCA ACGACAGTTA CAACTCCAGC
TTCGACAATG CCAGAGAGAA ATCCTGGCAG TTGCGTCACG ATTACGACTT CGCAGCCCTC
GGCGCGCCTG GCCTGACCCT GATGAACCGC TACATCAGCG GCGACAACGT GCACACCGGC
GCTATCACCG ATGGCGAAGA ATGGGCACGG GAAACCGAGT TGGCCTATGT GTTTCAGAGT
GGTGCGTTCA AAAGCCTGTC GCTCAAGTGG CGCAACTCGA CCATGCGTCG TGATTACAGC
ACTAACCAGT TCGACGAAAA CCGTGTGATC GTCAGCTACC CGCTGTCGCT GCTCTGA
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| Protein sequence | MRSNVSCKIA CGLSAAIAST LAPALSHAAG FVEDAKVNLN LRNFYINRNF VDPANAQNYA
EEWTQNFILD ARSGFTQGTV GFGVDALGLY SLKLDGGKGT GGTQLLPIHS DGRPADDFGR
LAVAGKARFS KTELKVGEWM PVLPILRSDD GRSLPQTFQG GQITSKEIDG LTLYGGQFRA
NSPRNDASMQ DMSMTGRAAF TFDRFNFGGG EYVFNEKRTQ VGVWYAQLED IYHQQYFNLL
HSQPLGSWTL GANLGYFQGK DDGQSLAGDL DNKTWSALLS ARHGGNTFYV GLQKVSGDSA
WMRVNGTSGG TLANDSYNSS FDNAREKSWQ LRHDYDFAAL GAPGLTLMNR YISGDNVHTG
AITDGEEWAR ETELAYVFQS GAFKSLSLKW RNSTMRRDYS TNQFDENRVI VSYPLSLL
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