Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2301 |
Symbol | nasA |
ID | 1183952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2544732 |
End bp | 2547458 |
Gene Length | 2727 bp |
Protein Length | 908 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637393680 |
Product | nitrate reductase |
Protein accession | NP_792120 |
Protein GI | 28869501 |
COG category | [C] Energy production and conversion |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0421585 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGCGCATGA CCAGCATGGC CATCCAGACC ACTCAGGTGA CGGCATCCAC CTGCTGCTAT TGCGGCGTCG GCTGCGGGGT GCTGATCGAG CATGACGGGC AGCGCATTCT CGGCGTCAGC GGCGATCCCC AACACCCGGC GAACTTCGGC AAGCTGTGCA GCAAAGGTTC GAGCCTGCAC CTGACCGGCG ACATCGAAGC ACGGGCGTTG TACCCGGAGC TGCGCCTGAG CAAAGGGCTG GCGCGCAGCG TGACCGATTG GGACACCGCA CTGGAGCACG CCGCCACCGT GTTTGCCGAG AGCATTCGCG AACACGGCCC CGACAGCGTG GCGTTCTACA TTTCCGGCCA GTTGCTGACC GAGGACTACT ACGCGTTCAA CAAGCTGGCC CGCGCACTGG TCGGCACCAA CAACATCGAC AGCAACTCGC GGCTGTGCAT GTCTTCGGCC GTGGCCGGCT ACAAGCGCAG CCTGGGGGCC GATGCGCCGC CGTGCAGCTA CGAGGACCTC GAGCTGAGCG ACTGCGTGAT GATCGTCGGC AGCAACATGG CCTACGCGCA TCCGATTCTG TTTCGCCGTC TGGAAGAAGC AAAAAGCCGC CGTCCCGCGA TGAAACTCAT CGTCATCGAT CCGCGTCGCA CCGATACCTG CGAACTGGCG GACCTGCACC TGGCGATTCA GCCCGGCACC GACGTCGCGC TGTTTCACGG CATCCTGCAC GTATTGATGA GCGAAAACCT GATCGACCCG CAATTCATTG CCGCCCATAC GCTGGGCTAT GACGAACTGG CAGCGCTGGT ATGTGATTAT CCGCCTGAAC GCGTGGCAAA CATCTGCGGT ATTTCACAGC AACACTTGCA CACCTGCGCC CGCTGGCTAG GCAAGTCGGC GGGCTTTCTG TCGCTGTGGT GCATGGGATT GAATCAGTCC ACTGCCGGCA GCGCGAAAAA CAGCGCACTG ATCAATCTGC ACCTGGCCAC CGGGCAGATT GGCCGACCCG GCGCCGGCCC TTTCTCGCTC ACCGGCCAGC CCAACGCCAT GGGCGGTCGC GAAACCGGCA GCCTGTCCAA CCTGCTGCCA GGCCATCGCG ATGCCGCCAA TCCCGAACAC CGCGCCGAAG TGGCCGAGTA CTGGGGCATC GACAGCCTGC CGGCTACTCC CGGCCTGTCC GCCATCGAGC TGTTCGAGCA ACTGCAAAAC GGCACGATCA AAGCCTTGTG GATTGCCTGC ACCAACCCGG CACAATCACT GCCCGACCAG AACAGAATCC GTCAGGCGCT GGAAACCTGC CCGTTCGTGG TGCTTCAGGA AGCCTTCAAG ACCACCGAAA CCGCACGCTT TGCCGACCTG CTGCTGCCCG CCGCCAGTTG GGGGGAAAAG GAAGGCACGG TAACCAACTC GGAACGGCGC ATCTCCAATG TGCGCAAAGC CATTCAGGCA CCCGGTGAAG CCCGTTCAGA CTGGGCCATT ACCGTGGATT TCGCCCAGCG TCTGCAAAAG CGCCTGCAGC CAGAAGCGCC TGCACTGTTC GACTTCCAGA CGCCAAAATC GCTGTTCGAT GAGTTCAAGG GCCTGACGGT CGGGCGCGAT CTGGACATGT CCGGTATCGA CCGCGAACTG ATTGACCGCC AAGGCCCACA GCAATGGCCG TTCCCGACAG GCGCCAGCGT GGGCACACCG CGTCTTTATC TCGATGGTAT TTTCCCGACG GCTTCGGGCC GCGCACAGTT TTTGGCCGAG CCCTATATCG CCGCCCGAGA ATTGCGTGAC GCTGAATATC CACTGACGCT CAACACCGGC AGGCTGCGCG ATCAATGGCA CGGCATGAGC CGCACCGGCA CCGCCGCGCG CTTGTTCGGG CATGTCAGCG AGGCGCTGTT GAGCCTCAAC CCAAAGCAAA TGCTTGGCCA TGACCTGCAG AACGGCGATC TGGTCAAACT GATCAGCCGA CGCGGCGAAC TGCTGCTGCC GGTCAGCAGT GATGACAGCG TTGTCGCCGG CCAGGCTTTT TTGCCGATGC ACTGGGGCGA GCGGTTTCTC AAGGGCGGCG TGAACGTCCT GACCCAGCCT GCCTTCGACC CGCTCTCCAA ACAGCCGGAG CTCAAGCACT CCGGGGTCAG AATCGAAAAA GCCCGGCTGC CCTGGCAGTT CTTCGCCTTG ATCGAGGGCA ATGTGCAACA GCACATGGAG CGCCTGCGAC CGCTGTGCGA AGCGTTCACC TACCTGAGCA TGGGCCTGAT CGGGCGAGAA CGACCGGCAC TGGTGGTGCG CGCGGCCAGC ACCGAAGCGC CAGACTCGAC GCTGCTGCAG CGCATCGACA GCCTGCTTAA CCTCGATGAA GGCCCGGTCA TGGCCTACGA CGACCCCAAG CGTTCAATCG GCAAACGGGT GCGGATCGAC AACGGGCGCA TCACCGCCAT CCGCCTGGCG GGAGAAACGC TCGCCCAGCA CTGGCTACAG ACGTTATGGC TGCAAGAGCG TGCCGATCCC GCGCTACGGC GATGGCTGCT GGCGCCTTTG AGCAGCGAGC CCGGCAAAGA CTCGACCCTG TCTCGCGACA AGACCTTGTG CAACTGCATG AACGTCAGCC AGAGCACGGT GATGAGCGGT ATCGAGCGAG GCCTGAACCT GAATCAACTC AAAACCCAAT TAGGCTGTGG GACGCAGTGC GGTTCGTGTG TCCCGGAAAT AAAAAGACTG ATCAACGCCG TGGCAGTGAC TGAATGA
|
Protein sequence | MRMTSMAIQT TQVTASTCCY CGVGCGVLIE HDGQRILGVS GDPQHPANFG KLCSKGSSLH LTGDIEARAL YPELRLSKGL ARSVTDWDTA LEHAATVFAE SIREHGPDSV AFYISGQLLT EDYYAFNKLA RALVGTNNID SNSRLCMSSA VAGYKRSLGA DAPPCSYEDL ELSDCVMIVG SNMAYAHPIL FRRLEEAKSR RPAMKLIVID PRRTDTCELA DLHLAIQPGT DVALFHGILH VLMSENLIDP QFIAAHTLGY DELAALVCDY PPERVANICG ISQQHLHTCA RWLGKSAGFL SLWCMGLNQS TAGSAKNSAL INLHLATGQI GRPGAGPFSL TGQPNAMGGR ETGSLSNLLP GHRDAANPEH RAEVAEYWGI DSLPATPGLS AIELFEQLQN GTIKALWIAC TNPAQSLPDQ NRIRQALETC PFVVLQEAFK TTETARFADL LLPAASWGEK EGTVTNSERR ISNVRKAIQA PGEARSDWAI TVDFAQRLQK RLQPEAPALF DFQTPKSLFD EFKGLTVGRD LDMSGIDREL IDRQGPQQWP FPTGASVGTP RLYLDGIFPT ASGRAQFLAE PYIAARELRD AEYPLTLNTG RLRDQWHGMS RTGTAARLFG HVSEALLSLN PKQMLGHDLQ NGDLVKLISR RGELLLPVSS DDSVVAGQAF LPMHWGERFL KGGVNVLTQP AFDPLSKQPE LKHSGVRIEK ARLPWQFFAL IEGNVQQHME RLRPLCEAFT YLSMGLIGRE RPALVVRAAS TEAPDSTLLQ RIDSLLNLDE GPVMAYDDPK RSIGKRVRID NGRITAIRLA GETLAQHWLQ TLWLQERADP ALRRWLLAPL SSEPGKDSTL SRDKTLCNCM NVSQSTVMSG IERGLNLNQL KTQLGCGTQC GSCVPEIKRL INAVAVTE
|
| |