| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2267 |
|---|
| Symbol | |
|---|
| ID | 1183918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2511730 |
|---|
| End bp | 2512413 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393646 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | NP_792086 |
|---|
| Protein GI | 28869467 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0167995 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA GTATTCTCAG TGCCCAAAAC CTCAGCAAAG TGGTCCCCAG CACCGAAGGT
GACCTTACCA TCCTGCACGA ACTCTCCCTG GAACTAAACA AGGGCGACAC GCTGGCCATC
GTCGGTGCCT CCGGCTCGGG CAAATCTACG CTGCTCGGGT TGCTCGCCGG GCTCGACCTG
CCCAGCGCCG GTTCCGTCAT CCTGTCAGGC CGCAACCTCA GCGAGCTGGA TGAAGACCAG
CGCGCCAGAG TGCGCGCCGA GCACGTCGGG TTTGTCTTTC AGTCATTCCA GTTGCTCGAC
AGCCTGAATG CACTGGAAAA CGTCATGCTG CCGATGGAGC TCGAAGGCCG CAAGGACGCC
CGCGAAAAAG CCCGCGACCT GCTGGAGCGC GTGGGGTTGG GCAAGCGCCT GACCCACACA
CCACGCCAGT TGTCCGGAGG CGAACAGCAA CGCGTGGCGA TTGCCCGCGC TTTCGCCGCC
GATCCGCACG TTTTGTTTGC CGACGAACCT ACCGGCAACC TGGACAGTCA CACCGGCGAG
CGCATCAGCG ACCTGCTGTT CGAACTGAAC AAGGAACGCA ACACCACGCT GGTGCTGGTC
ACCCACGATG AGCGCCTCGC CCATCGCTGC CGCCGTCTGA TCCGTCTTGA AGGGGGCCGC
CTGGTCGCCC CGCTGGAGCC TTGA
|
|---|
| Protein sequence | MSESILSAQN LSKVVPSTEG DLTILHELSL ELNKGDTLAI VGASGSGKST LLGLLAGLDL
PSAGSVILSG RNLSELDEDQ RARVRAEHVG FVFQSFQLLD SLNALENVML PMELEGRKDA
REKARDLLER VGLGKRLTHT PRQLSGGEQQ RVAIARAFAA DPHVLFADEP TGNLDSHTGE
RISDLLFELN KERNTTLVLV THDERLAHRC RRLIRLEGGR LVAPLEP
|
|---|
| |