| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2245 |
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| Symbol | kdpD |
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| ID | 1183896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2486379 |
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| End bp | 2489042 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637393626 |
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| Product | sensor protein KdpD |
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| Protein accession | NP_792066 |
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| Protein GI | 28869447 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.199032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTGATT CCGGTCGAGC TGACGCATTG TTGGCCCAGT TACCCCGCGA AGGCCGTGGG
CGGCTGAAAG TTTTTCTCGG CGCGGCGCCT GGCGTCGGCA AAACCTACGC CATGCTCCAG
GCAGCCCACG CGCAGTTACG CCAGGGCGTC AGGGTGATGG CGGGCGTGGT GGAAACCCAC
GGCCGCGCGG AAACCGAGGC GTTGCTCAAC GGCCTGCCGC AACAGCCCTT GCTGCGCACC
GAATACCGCG GCATGACCCT CGAAGAAATG GACCTCGACG CGCTGCTCAA GGCGGCGCCG
AGCCTGGTGC TGGTCGACGA ACTGGCGCAC ACCAATGCGC CCGGCAGCCG GCACACCAAA
CGCTGGCAGG ATATTCAGGA ATTGCTCGCG GCCGGCATCG ACGTCTATAC CACCGTCAAC
GTCCAGCACC TGGAAAGCCT CAATGATCAG GTGCGCGGCA TCACCGGCGT GCAGGTGCGT
GAAACACTGC CCGATTGGGT GTTGCAGGAA GCCTTCGACC TGGTGCTGAT CGACCTGCCG
CCGCGCGAGC TGCTCGAGCG CCTGCGCGAC GGCAAGGTCT ACGTACCGGA GCAGGCGCGC
GCTGCCATCG ACGCCTTCTT CACCCAGACC AACCTCACCG CGCTGCGCGA AATGGCCATG
CAGACCGCAG CGGCGCAGGT CGATAACGAT CTGGCGCAGG GCTATCGGCA ATTGGGCCAG
TCTGCCCCGG CGGTGCGCGG GCGGATGTTG GTGGGCATTG ATGGCGACAT GCATGCCGAG
CGTCTGGTGC GCCACGCCAG CCGGGTGGCC CAGCGTCGTC ATCTGCCTTG GAGCGCGGTG
CATGTGGATG ACGGGCAAAC CCTCGACGAG CAATCGCGGG CACGCTTGCA AAACGCCCAG
CAACTTGCCG AGCGACTCGG TGGTGAAGCG GTTTCGTTGC GCGCCGGGGA AGTTGCCAGA
ACGCTGGTGC AGCATGCCAT CGAACGGCGT GCCAGCGTGG TGCTGGTCGG GCAATCGCGG
CGGCACTGGC GACGCCGGGT GTTCGGTGGT GGCGTCGCGG CGCGTTTGCT GCGCGAAGGG
CACGGGCTGG AAATCTCGGT GCTCGATGAC AGTGAAGAGC TGCCTGATCA ACCGCCGCGT
GCGCGCCCGG CGCGCGAAGT GGTGTGGTTC GACTACGGCC TGGCTTTCGT CGCCACGCTG
ATCGCCAGTC TGGTGGCCTG GGGTGTGGCG GGGGTGCTGG CGCTGCCCAA TATTTCCCTG
ATCTTTCTCG CCGCGGTGCT GCTGGTCGCC GTGCGCAGCA GCATGGGGCC GGCGCTGGCC
TGTGCCGGAT TGTCGTTTCT GGCTTACGAC TTCTTGTTCA TACCGCCGAG TTTTTCCCTG
AACATCCAGC GCGAAGAGGA CGTGCTGACG CTGTTGTTCT TCCTGCTGAT GTCGGCGCTG
ACCGGCAAAC TGGCTGCTCG CCAGCGCAGG CAATTGCAGG CGCTGCGTGA TACTCAGGAA
CAGACCAGCG AGCTGCTCGA CCTGTCGCGC AAGATGACCG CCGCCACTGA CCGCAAAGCG
GTACTCAACG CCGCCGAACA GCATTTTTCC GGCTGGAAGG AGCTGTACCT GTGCCTGGTG
GATCGCGATA CGCAGGGCGG CCTGGTGGTC GAAACCGGCG GGCCGCTGAC GTTTTCGGAA
GCCGAACGGG CAGCGGCCGA CTGGGCGTGG CAGCACGATC AACCGGCAGG CAGCGGCACC
GGTACGCTAC CTTCGGGTCG CTGGTGGTGG TGGCCGATTA CCGCAGAAGA AGGGCCACTG
GCATTGCTGG GTGTGTGTGC ACGGGAAGGG CAGTCGTTTA CCGATCAGCA CAGACGGCTG
CTGGCCGCAC TGACTCAGCC ACTCGCCCAG GCCTTGGCCC GTGCGCAACT GGCGCAGGAG
CTTGAGGCGG CGCGTCTGCA CGGCGAAACC GAGCAACTGC GCAGCGCCTT GCTGGCCTCG
GTGTCGCACG ACCTGCGTAC CCCGCTGACC TCGATGCGCG GCAGTATCGA CAGCCTGCTA
GCGCTGGGCG AAGCCATTGC GCTGGAGGAT CGCCGCGAGC TGCTGGAAGG CACTCGTGAC
GAGGCTGAGC GCCTGGACCG CTATATCCAG AACCTGCTGG ACATGACCCG TCTGGGCCAT
GGAGCGCTGA AACTGGCGCG CGACTGGGTG TCGCCTGCCG ATATTGTCGG CAGCGCGCTG
AACCGCCTGC GTGCGGTGCT GACGCCGTTG CAGGTCAGCA CGCAGGTCAC CGGCGACTTG
CCGTTGCTGT ATGTCCACGC GGCGTTGATC GAGCAGGCGC TGGTCAACGT CCTGGAGAAC
GCGGCACGTT TTTCACCCCT CGGCGGGCGC TTGCAAGTAA CGGCCGGCGT GGTCGACAGC
GAGCTGTTCT TCTCGGTCAG TGACGAAGGG CCTGGCATCC CCGAGGATGA GCGGGCGAAG
ATTTTCGACA TGTTCTACAC CGCCGCTCGC GGTGATCGCG GCGGGCAGGG CACCGGGCTC
GGCCTGGCAA TCTGTCAGGG CATGATCGGC GCGCATGGCG GACGGCTCAC GGTCGAGGAA
GGCATCGACG GGCTGGGTAC GCGCATCACG TTGTTTCTGC CGCTACAGGC CCAGCCTGAC
GCTGAAATGG AGGAACCCGC TTGA
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| Protein sequence | MSDSGRADAL LAQLPREGRG RLKVFLGAAP GVGKTYAMLQ AAHAQLRQGV RVMAGVVETH
GRAETEALLN GLPQQPLLRT EYRGMTLEEM DLDALLKAAP SLVLVDELAH TNAPGSRHTK
RWQDIQELLA AGIDVYTTVN VQHLESLNDQ VRGITGVQVR ETLPDWVLQE AFDLVLIDLP
PRELLERLRD GKVYVPEQAR AAIDAFFTQT NLTALREMAM QTAAAQVDND LAQGYRQLGQ
SAPAVRGRML VGIDGDMHAE RLVRHASRVA QRRHLPWSAV HVDDGQTLDE QSRARLQNAQ
QLAERLGGEA VSLRAGEVAR TLVQHAIERR ASVVLVGQSR RHWRRRVFGG GVAARLLREG
HGLEISVLDD SEELPDQPPR ARPAREVVWF DYGLAFVATL IASLVAWGVA GVLALPNISL
IFLAAVLLVA VRSSMGPALA CAGLSFLAYD FLFIPPSFSL NIQREEDVLT LLFFLLMSAL
TGKLAARQRR QLQALRDTQE QTSELLDLSR KMTAATDRKA VLNAAEQHFS GWKELYLCLV
DRDTQGGLVV ETGGPLTFSE AERAAADWAW QHDQPAGSGT GTLPSGRWWW WPITAEEGPL
ALLGVCAREG QSFTDQHRRL LAALTQPLAQ ALARAQLAQE LEAARLHGET EQLRSALLAS
VSHDLRTPLT SMRGSIDSLL ALGEAIALED RRELLEGTRD EAERLDRYIQ NLLDMTRLGH
GALKLARDWV SPADIVGSAL NRLRAVLTPL QVSTQVTGDL PLLYVHAALI EQALVNVLEN
AARFSPLGGR LQVTAGVVDS ELFFSVSDEG PGIPEDERAK IFDMFYTAAR GDRGGQGTGL
GLAICQGMIG AHGGRLTVEE GIDGLGTRIT LFLPLQAQPD AEMEEPA
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