| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2228 |
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| Symbol | fimD |
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| ID | 1183879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2455258 |
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| End bp | 2457771 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637393609 |
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| Product | outer membrane usher protein fimD |
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| Protein accession | NP_792049 |
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| Protein GI | 28869430 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.531557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTAT TACCCGACTC CGGGCTCATA CCGGTGCGCC TGCGTTTTAT GCAGTTGCTG
ATTGTCTGCG GCAGCGGAGC CCTGCCACTG GAGCTGATTC AGGCCGCAGA CCTCGTCAAT
TTCCAGTCCG GTTTTCTGCG CCAGGGCCAG GGCTACGATA TCGACGCTGC AAACAAAGCG
CTGAATAACC TCGCAGAGGT CGAAGACCTG GCACCCGGCA ACCACTGGGT CGAAATTCAC
ATCAACACGC GTTACTTCGG TCAGCGGGAA CTGCGCTTCG ATGCCGACCC GCAAGGCAAC
GGTCTGCTGC CATGCCTGTC AAAAGAGCTA CTTGAGCAAA TGGGCGTACG CATCGAGAGC
CTGGCCGAGC AGACATTATT GCAGGCCTCC TGCGTCGACC TGTCCCGGCT GATTCCCCAG
GCAACCACCA AACTGGACGG CGGCAGGCTG CAACTGTCGA TCTCCATACC GCAGATCGCC
ATGCGCCTGG ATGCCATCGG CAGGGTTGAT CCGGCGCTCT GGGATTACGG CATCAATGCC
GCATTCGTCA GTTACCAGGC GTCCGCGCAG CAAACCACGC GTACCGACAC CGGCACAGGC
AACAGCGCGA ATCTGTACCT TAATAGCGGT ATCAACCTTG GCGCATGGCG ACTGCGCAGC
AATCAAAGCG TGCGTCACGA CGAAGAGGGT CGTCGTGAAT GGACAAGGGC CTATGCATAC
GCCCAACGTG ACCTGCCCGG CACTCACGCG AATCTGACCA TCGGCGAGAC GTCCACCGAC
AGCAATGTTT TCCGCAGCGT ACCGATCAAA GGCGCACTGA TCAAAACCGA TCAGGAAATG
CTCCCCGACA CCGCACAGGG GTACGCCCCG GTGATTCGCG GTGTGGCGCA GAGTCGGGCG
AAGCTTGAAG TGCTGCAGAA CGGCTACCCG ATCTATTCCA CCTATGTCAG CGCCGGCCCC
TACGAAATCG ACGATCTGGC GGCTACGGGC AGCGGCGAAC TGGAAGTGGT ACTGACTGAG
GCGGACGGTC AGGTGCGGCG CTTCAGCCAG CCCTACGCAA CCATCGGCAA CCTGTTGCGT
GAGGGCGTCT GGAAATACAG CACCGCACTG GGCCGCTATA ACGGTGCCAG CGCAATCGAG
CAGCCCTGGA TTTGGCAAAG CACGCTGGCC ATTGGCACCG GCTGGAACGC CACCCTTTAC
GGCGGCTTGA TGGCCAGCGA CATGTACCGC GCCACCGCGC TGGGCATCTC GCGGGACCTG
GGCGCTTTGG GGGCCGTGGC ATTGGACGCA ACGCAGTCGG ACGCGGACAT TGATCGCGCC
GGAACGACCA GCGTGCAAGG CATGAGTTAC GCCCTCAAGT ACGGCAAGAT GTTTACCACC
AATACCAACC TGCGCTTCGC CGGTTACCGC TACTCCACTC AAGGCTATCG TGATTTCGAC
GAGACCATGC GTCAACGCGA TAACAACAGA CCCTTCACCG GCAGCCGCCG TAGCAGGCTG
GAGGCCTCCG TTCACCAAAA GGTCGGAAGC CGCAGCAGCG TCAGTCTGAC AATGTCCCGG
CAGAATTATT GGGGCAGCGC TGCCGAACAG CAGCAGTATC AATTCAACTT CAATACTCAG
CATGCCGGGG TCACCTACAA CCTGTATGCC TCACAATCGC TGACCGACAC ACGCAACCAG
AAAAATGACC GGCAGTTGGG GCTCAGCATC TCGCTGCCTC TGGATATCGG GCATTCGAGC
AGCGCAGCCT TCGACCTGCA GAACAGTGGT GATCACTACA GCCAGCGGGC CAGTCTGAGC
GGCAGCCTCG ACGATAACCG CCTCAATTAC CGAACCAGCC TGAGCAACGA TGACGGCCGC
CAGCAAAGCG CAGGTCTCGC GGTCGGCTAT CAGGCGCCTT TTGCAAGTTT CGGAGCGGGC
CTGACCCAAG GCAACGATTA TCGCAGCACG TCAATCAATG TCAGTGGCGC CCTGTTGATG
CACGCAGGGG GTATCGAACC CGGTCCGAGT CTGGGCGATA CCATTGCGCT GATCGAAGTG
CCCGACACAC CGGGCGTCGG TGTACAGAAT GCAATCGGGG TCGAGACCAA TAGTCGAGGG
TATGCACTGG TGCCCTACCT GCGGCCTTAC CGTTACAACC ACATCGAGCT GCAAACGGAT
CAGCTCGGTC CGGAGATCGA AATCGATAAC GGCAGCGCTC GAGTAGTGCC GGCTCGCGGG
GCCGTGGTCA AGACCACTTT TGCCGCACGC ACCGTCACAC GCCTGGTTAT CACGGCGCTT
ACCGACAGTG GCAAGCCGCT GCCGTTCGGT GCTCAGGTCA GCGACGCCGA AGGAAACATC
ATGGGCATTG CAGGCCAGGG CGGATTGATT TTGCTGTCCA CCGGCATGCA GGCACAAACC
CTCGACGTAA GCTGGGGTGA ACAGACGGAA TCCCGATGCC GACTGCACAT AGACCCGACC
AATATGCCGC TGACCAAAGG CTACCGAATA CAGTCATTGA CGTGCAGCCA ATGA
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| Protein sequence | MTLLPDSGLI PVRLRFMQLL IVCGSGALPL ELIQAADLVN FQSGFLRQGQ GYDIDAANKA
LNNLAEVEDL APGNHWVEIH INTRYFGQRE LRFDADPQGN GLLPCLSKEL LEQMGVRIES
LAEQTLLQAS CVDLSRLIPQ ATTKLDGGRL QLSISIPQIA MRLDAIGRVD PALWDYGINA
AFVSYQASAQ QTTRTDTGTG NSANLYLNSG INLGAWRLRS NQSVRHDEEG RREWTRAYAY
AQRDLPGTHA NLTIGETSTD SNVFRSVPIK GALIKTDQEM LPDTAQGYAP VIRGVAQSRA
KLEVLQNGYP IYSTYVSAGP YEIDDLAATG SGELEVVLTE ADGQVRRFSQ PYATIGNLLR
EGVWKYSTAL GRYNGASAIE QPWIWQSTLA IGTGWNATLY GGLMASDMYR ATALGISRDL
GALGAVALDA TQSDADIDRA GTTSVQGMSY ALKYGKMFTT NTNLRFAGYR YSTQGYRDFD
ETMRQRDNNR PFTGSRRSRL EASVHQKVGS RSSVSLTMSR QNYWGSAAEQ QQYQFNFNTQ
HAGVTYNLYA SQSLTDTRNQ KNDRQLGLSI SLPLDIGHSS SAAFDLQNSG DHYSQRASLS
GSLDDNRLNY RTSLSNDDGR QQSAGLAVGY QAPFASFGAG LTQGNDYRST SINVSGALLM
HAGGIEPGPS LGDTIALIEV PDTPGVGVQN AIGVETNSRG YALVPYLRPY RYNHIELQTD
QLGPEIEIDN GSARVVPARG AVVKTTFAAR TVTRLVITAL TDSGKPLPFG AQVSDAEGNI
MGIAGQGGLI LLSTGMQAQT LDVSWGEQTE SRCRLHIDPT NMPLTKGYRI QSLTCSQ
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