| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2133 |
|---|
| Symbol | |
|---|
| ID | 1183780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2306144 |
|---|
| End bp | 2306680 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637393511 |
|---|
| Product | RNA polymerase sigma-70 family protein |
|---|
| Protein accession | NP_791955 |
|---|
| Protein GI | 28869336 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.787877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAC ACGTAATCAC AAGTAAGTGC GAGTCACCGC TACTCCAGGC ATTCGTCGAC
AACTATCTGC TGCTGGTCAA GATTGCCGCG CGCATCGTGG GCTGCCGGTC TCGCGCCGAG
GACGTTGTGC AGGATGCGTT CTTCAGATTG CGCTCCGCGC CTCAGGCCAC GCTGACCTTC
AAGGCACAGC TCAGCTATCT CTTTCAGATC GTGCGCAATC TGGCCATTGA TCACTACCGC
AAGCAGGCAC TGGAACAGAA ATACACCGGC CCTGAGGCCG AGGGGCTGAA TGTGGTGATT
CAGGGTGCAT CGCCAGAAAT CTCGCACATC AATTTCACAA GCCTGGAGAA AATCGCCGAC
GCCCTGAGCG AGTTGCCGCC CCGCACCCGT TACGCGTTCG AGATGTATCG CCTGCACGGC
GTGCCGCAGA AGGACATCGC CAAGGAACTG GGCGTATCGC CGACGCTGGT CAATTTCATG
ATCCGTGATG CGCTGATTCA TTGCCGCAAG GTCAACGGCA CCACTGCCGA AGCCTGA
|
|---|
| Protein sequence | MTEHVITSKC ESPLLQAFVD NYLLLVKIAA RIVGCRSRAE DVVQDAFFRL RSAPQATLTF
KAQLSYLFQI VRNLAIDHYR KQALEQKYTG PEAEGLNVVI QGASPEISHI NFTSLEKIAD
ALSELPPRTR YAFEMYRLHG VPQKDIAKEL GVSPTLVNFM IRDALIHCRK VNGTTAEA
|
|---|
| |