| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2126 |
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| Symbol | |
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| ID | 1183773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2299104 |
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| End bp | 2300114 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637393504 |
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| Product | TIM-barrel protein, yjbN family |
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| Protein accession | NP_791948 |
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| Protein GI | 28869329 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCCAG ATATCGCACC AAACCCCCAT TCAACAAGGC CTGGCCTATC CCGCCGCTTC
TCCGTCGCCC CCATGATGGA CTGGACCGAT CACCATTGCC GCTATTTCAT GCGGCTGCTC
TCCAGCCAGG CATTGCTCTA CACCGAGATG GTCACTACCG GTGCCTTGCT CCATGGCGAC
CGTGAGCGTT TCCTGCGTCA CGACGAAACC GAGCACCCGT TGGCATTGCA ACTGGGCGGC
AGCACGGCGG CGGGCCTGGC GGCGTGTGCG CGGCTAGCGG AGGCGGCGGG GTATGACGAG
GTCAATCTGA ACGTCGGGTG TCCGAGTGAT CGGGTGCAGA ACAACATGAT CGGCGCGTGC
CTGATGGCGC ACCCGCAGTT GGTGGCTGAT TGCGTGAAGG CCATGCGCGA TGCGGTGGGC
ATTCCGGTCA CGGTCAAGCA TCGCATCGGC ATCAACGGCC GCGACAGTTA TGCCGAGTTG
TGCGATTTCG TCGGCACGGT TCATGATGCG GGTTGCCAGA GTTTTACGGT TCATGCGCGC
ATCGCGATTC TTGAGGGGCT GTCTCCCAAG GAGAACCGCG ATATTCCGCC ACTGCGTTAT
GACGTGGTTG CGCAACTGAA GACTGATTTT CCTGAACTGG AGATCGTCCT TAACGGCGGC
ATCAAGACGC TGGAGCAGTG CAGTGAGCAT CTGCAGACGT TTGATGGCGT CATGCTGGGT
CGTGAGGCGT ATCACAACCC GTATCTGCTG GCGCAGGTGG ATCAGCAATT GTTCGGCAGT
GTTGCGCCGG TCATAAGTCG TCACGCGGCA CTGGAGTCGA TGCGGCCTTA TATCGCCGCG
CACATTGCCA GCGGCGGCAA CATGCACCAC GTGACCCGGC ATATGCTCGG GCTTGGTCTG
GGGTTCCCCG GCGCGCGGCG TTTTCGGCAG TTGTTGTCGG TGGATATCCA CAAAGCGGAA
AATCCGCTGC TGTTGCTGGA TCAGGCGGCG AAGTTTCTCG AAGGGCATTG A
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| Protein sequence | MQPDIAPNPH STRPGLSRRF SVAPMMDWTD HHCRYFMRLL SSQALLYTEM VTTGALLHGD
RERFLRHDET EHPLALQLGG STAAGLAACA RLAEAAGYDE VNLNVGCPSD RVQNNMIGAC
LMAHPQLVAD CVKAMRDAVG IPVTVKHRIG INGRDSYAEL CDFVGTVHDA GCQSFTVHAR
IAILEGLSPK ENRDIPPLRY DVVAQLKTDF PELEIVLNGG IKTLEQCSEH LQTFDGVMLG
REAYHNPYLL AQVDQQLFGS VAPVISRHAA LESMRPYIAA HIASGGNMHH VTRHMLGLGL
GFPGARRFRQ LLSVDIHKAE NPLLLLDQAA KFLEGH
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