| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2110 |
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| Symbol | lolD |
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| ID | 1183757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2285367 |
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| End bp | 2286050 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637393488 |
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| Product | lipoprotein releasing system, ATP-binding protein LolD |
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| Protein accession | NP_791932 |
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| Protein GI | 28869313 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.327519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTGATA AAGCAGTATT GAGTTGCCGC AATCTGGGTA AGTCCTACGA GGAAGGCCCG
GAGTCTGTGG TGGTGTTGTC CGGCCTGCAA CTGGAGCTGC ATCCGGGTGA GCGGGTTGCG
ATTGTCGGTA CTTCCGGGTC GGGTAAAAGC ACCTTGCTGA ACCTGCTGGG CGGGCTGGAC
ACGCCGTCCG AAGGCAGTGT CTGGCTGGCG GGCGAAGAGT TGTCGGCACT GGGCGAAAAG
GCCCGTGGCC TGCTGCGCAA CCGGGCGCTG GGTTTCGTCT ATCAGTTTCA CCACTTGCTG
CCCGAGTTCA CCGCACTTGA AAACGTCTGC ATGCCGCTGT TGATCGGCCG CACCGCCATC
CCCGAGGCGC GCCAGCGTGC CACGGCGTTG CTGGAGCGTG TCGGCCTCGG TCATCGTCTG
GCGCACAAGC CTTCCGAGTT GTCCGGCGGT GAGCGTCAGC GTGTCGCCAT TGCTCGTGCA
CTGATCAATC AGCCGGGTCT GGTGATGCTC GACGAGCCCA CCGGCAACCT CGATCACCAT
ACCGCGCAGG GCATCCAGGA CCTGATGCGT GAATTGAGCA CCTCGTCGCG TACGGCATTT
CTGATCGTGA CTCACGACAT GAGCCTTGCC AGACAGATGG ACCGCATCCT GCGTCTGGAA
GGCGGGCGTC TGGTCGAAGC CTGA
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| Protein sequence | MSDKAVLSCR NLGKSYEEGP ESVVVLSGLQ LELHPGERVA IVGTSGSGKS TLLNLLGGLD
TPSEGSVWLA GEELSALGEK ARGLLRNRAL GFVYQFHHLL PEFTALENVC MPLLIGRTAI
PEARQRATAL LERVGLGHRL AHKPSELSGG ERQRVAIARA LINQPGLVML DEPTGNLDHH
TAQGIQDLMR ELSTSSRTAF LIVTHDMSLA RQMDRILRLE GGRLVEA
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