| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2101 |
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| Symbol | mfd |
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| ID | 1183748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2271733 |
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| End bp | 2275185 |
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| Gene Length | 3453 bp |
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| Protein Length | 1150 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637393480 |
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| Product | transcription-repair coupling factor |
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| Protein accession | NP_791924 |
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| Protein GI | 28869305 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.325386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCAGTTC TGCGTCTACC GCTTCTTTCT GCCGCTGCAG GCAAACAACA CTGGGGCAAT
CTTCCCGGTG CTGCACTGAG CCTGGCCATT GCCGAGGCCG CCAGCGCGGC CAAGCGCTTC
ACCCTGCTTT TGACCGCCGA CAGCCAGAGC GCCGAGCGGC TTGAGCAAGA GCTGAAGTTT
TTTGCGCCCA CGCTGCCGGT TCTGCACTTC CCGGACTGGG AAACCCTGCC CTACGATCTG
TTTTCGCCGC ACCAGGACAT CATTTCCCAG CGCATCGCCA GCCTTTATCG CCTGCCGGAG
CTGGAGCATG GCGTTTTGGT AGTACCGATC ACCACCGCCC TACACAGACT CGCGCCGACC
AAATTTCTGC TCGGCAGCAG CCTGGTGCTG GACGTCGGCC AGAAGCTCGA CGTGAACGCC
ATGCGCACAC GCCTGGAAGC CAGCGGTTAT CGTTATGTGG ATACGGTTTA CGAGCACGGC
GAGTTCACAG TGCGTGGTGC GCTGATCGAC CTGTTCCCGA TGGGCAGCAA GCTGCCGTTT
CGCATCGATC TGTTCGACGA TGAAATCGAA ACCCTGCGCA CTTTCGACCC GGACACCCAG
CGCTCCATCG ACAAGGTCGA ATCGGTACGC CTGCTGCCGG CCCGTGAATT CCCGTTACAG
AAAGAAGAAG TCACCCGTTT CAAGGCGCGA TTCCGCGAAC GCTTCGACGT GGACTTCCGG
CGCAGCCCGA TCTTCCAGGA CTTGAGCAGC GGTATCACGC CAGCCGGTAT CGAGTACTAC
ATTCCGCTGT TCTTCGAAGA AACCTCGACC CTGTTCGATT ACCTGCCGCA GGACACTCAG
GTGTTTTCCT TGCCGGGCAT CGAGCAGGCC GCCGAGAATT TCTGGAACGA CGTGCGCAAC
CGCTACGAAG AACGCCGCGT CGATCCAGCC CGGCCGCTGC TCCCCCCGGC CGAGCTGTTC
CTGCCGGTGG AAGACTGCTT TGCGCGCCTG AAAAACTGGC CGCGCGTAGT GGCCAGCCAG
CAGGATGTCG ACGCCGGAGC CGGGCGCGAG CGCTTCCCGG CCCAGGCCCT GCCGGACCTT
TCGATTGAAG CCAAGGCCAC TCAGCCGTTG GCTGCGCTGG CAAAGTTTCT GGATGATTTT
CCCGGTCGCG TGCTGTTCAC TGCCGAGTCC GCAGGACGCC GGGAAGTGCT GCTGGAACTG
CTCGAACGTC TGAAACTGCG ACCGAAAACC GTCGACGGCT GGCTGGACTT CGTCGAGGGC
GAGGATCGCC TGGCAATCAC CATTGCGCCG CTGGACGAAG GCCTGCTGCT CGACCAGCCG
GCACTGGCAC TGGTCGCGGA AAGCCCGCTG TTCGGCCAGC GCGTCATGCA GCGCCGCCGT
CGCGAAAAAC GCACCGATGG CGGTAATAAC GACGCCGTCA TCAAGAACCT GACCGAACTG
CGCGAAGGCG CGCCGGTGGT GCACATCGAT CACGGTGTCG GACGCTACCT GGGCCTGGCC
ACGCTTGAGG TCGAAAATCA GGTCGCCGAA TTCCTGATGC TGGCCTACGC CGAGGACGCC
AAGCTGTACG TTCCGGTCGC CAACCTGCAC CTGATCGCCC GCTACACCGG CAGCGACGAC
GAAATGGCGC CGCTGCATCG CCTGGGCTCG GAAACCTGGC AGAAGGCCAA ACGCAAGGCC
GCCGAACAGG TTCGCGACGT GGCAGCCGAA CTGCTCGACA TCTACGCTCG CCGTGCAGCC
CGCGAAGGCT ATGCGTTTGC CGACCCGAAA GCCGATTACG CCACGTTCAG CGCAGGCTTT
CCATTTGAGG AAACCCCGGA TCAGCAGACC ACCATCGAAG CCGTGCGCGC CGACATGCTC
GCGCCCCGGC CGATGGACCG CCTGGTGTGC GGCGACGTGG GCTTCGGCAA GACCGAAGTG
GCCATGCGCG CCGCATTCAT TGCCGTGCAC GGCGGGCGTC AGGTCGCGAT TCTGGTGCCG
ACCACCCTGC TCGCCCAGCA GCACTACAAC AGCTTCCGCG ACCGCTTTGC CGACTGGCCG
GTGACGGTCG AAGTCATGAG CCGCTTCAAG TCGGCCAAGG AAGTCAGCGC AGCCGTCGCC
AATCTGGCCG AAGGCAAGAT CGACATCGTC ATCGGCACGC ACAAGCTGCT GCAGGATGAC
GTGAAGATCA AAAACCTCGG CCTGGTGATC ATCGACGAAG AACACCGTTT CGGTGTTCGC
CAGAAAGAAC AGCTCAAGGC GTTGCGCAGC GAGGTCGACA TTCTGACCCT GACGGCAACG
CCGATCCCGC GCACCCTGAA CATGGCCGTG TCGGGCATGC GTGATCTGTC GATCATCGCC
ACGCCACCGG CGCGCAGGCT GTCGGTGCGC ACCTTCGTCA TGGAGCAGAA CAAGCCGACG
ATCAAAGAAG CCCTGTTGCG CGAGTTGCTG CGCGGCGGGC AGGTCTACTA CCTGCACAAC
GACGTCAAGA CCATCGAAAA ATGCGCGGCG GACCTGGCCG AACTGGTGCC GGAAGCCCGC
ATCGGCATTG GCCACGGCCA GATGCGTGAA CGCGACCTCG AGCAGGTGAT GAGCGATTTC
TACCACAAAC GCTTCAACGT ACTGATCGCC TCGACCATCA TCGAGACCGG CATCGACGTG
CCGAGCGCCA ACACCATCAT CATCGAGCGT GCCGACAAGT TCGGCCTGGC GCAATTGCAC
CAACTGCGCG GGCGCGTCGG GCGCAGTCAC CACCAGGCTT ATGCCTACCT GCTGACACCG
CCACGCAAAC AGATTACCTC CGACGCCGAA AAGCGTCTGG AAGCGATTGC CAACACTCAG
GACCTCGGCG CGGGCTTCGT ACTCGCCACC AACGACCTGG AAATACGCGG TGCTGGCGAA
CTGCTTGGCG ACGGCCAGAG CGGCCAGATC CAGGCCGTGG GCTTCACGCT GTACATGGAG
ATGCTCGAGC GCGCGGTCAA GTCGATCCGC AAAGGCGAAC AGCCCAACCT TGATCAGCCG
CTGGGCGGCG GCCCGGAAAT CAACCTGCGC GTACCGGCGC TGATCCCGGA AGCCTATCTG
CCGGATGTGC ATACGCGCCT GATTCTCTAC AAGCGCATCG CCAACGCGGC TGACGAAGAC
GCCCTGAAAG ACCTGCAAGT CGAGATGATC GACCGTTTCG GTTTGCTGCC GGAGCCGACC
AAGAATCTGG TGCGCATTAC CCTGCTCAAG CTGCAAGCCG AGCAACTGGG TATCAAGAAA
GTCGACGGCG GGCCGCAGGG TGGGCGTATC GAGTTCGCGA CCGAAACTCC GGTCGATCCG
TTGACCCTGA TCAAACTGAT CCAGAGCCAG CCCAACCGCT ACAAGTTCGA AGGTGCCACA
CTGTTCAAAT TCATGGTGCC CATGGAGCGC CCTGAAGAGC GCTTCAACAC GATCGAAGCG
CTGTTTGAGC GCCTGACCCC GAAAACTGCC TGA
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| Protein sequence | MPVLRLPLLS AAAGKQHWGN LPGAALSLAI AEAASAAKRF TLLLTADSQS AERLEQELKF
FAPTLPVLHF PDWETLPYDL FSPHQDIISQ RIASLYRLPE LEHGVLVVPI TTALHRLAPT
KFLLGSSLVL DVGQKLDVNA MRTRLEASGY RYVDTVYEHG EFTVRGALID LFPMGSKLPF
RIDLFDDEIE TLRTFDPDTQ RSIDKVESVR LLPAREFPLQ KEEVTRFKAR FRERFDVDFR
RSPIFQDLSS GITPAGIEYY IPLFFEETST LFDYLPQDTQ VFSLPGIEQA AENFWNDVRN
RYEERRVDPA RPLLPPAELF LPVEDCFARL KNWPRVVASQ QDVDAGAGRE RFPAQALPDL
SIEAKATQPL AALAKFLDDF PGRVLFTAES AGRREVLLEL LERLKLRPKT VDGWLDFVEG
EDRLAITIAP LDEGLLLDQP ALALVAESPL FGQRVMQRRR REKRTDGGNN DAVIKNLTEL
REGAPVVHID HGVGRYLGLA TLEVENQVAE FLMLAYAEDA KLYVPVANLH LIARYTGSDD
EMAPLHRLGS ETWQKAKRKA AEQVRDVAAE LLDIYARRAA REGYAFADPK ADYATFSAGF
PFEETPDQQT TIEAVRADML APRPMDRLVC GDVGFGKTEV AMRAAFIAVH GGRQVAILVP
TTLLAQQHYN SFRDRFADWP VTVEVMSRFK SAKEVSAAVA NLAEGKIDIV IGTHKLLQDD
VKIKNLGLVI IDEEHRFGVR QKEQLKALRS EVDILTLTAT PIPRTLNMAV SGMRDLSIIA
TPPARRLSVR TFVMEQNKPT IKEALLRELL RGGQVYYLHN DVKTIEKCAA DLAELVPEAR
IGIGHGQMRE RDLEQVMSDF YHKRFNVLIA STIIETGIDV PSANTIIIER ADKFGLAQLH
QLRGRVGRSH HQAYAYLLTP PRKQITSDAE KRLEAIANTQ DLGAGFVLAT NDLEIRGAGE
LLGDGQSGQI QAVGFTLYME MLERAVKSIR KGEQPNLDQP LGGGPEINLR VPALIPEAYL
PDVHTRLILY KRIANAADED ALKDLQVEMI DRFGLLPEPT KNLVRITLLK LQAEQLGIKK
VDGGPQGGRI EFATETPVDP LTLIKLIQSQ PNRYKFEGAT LFKFMVPMER PEERFNTIEA
LFERLTPKTA
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