| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2099 |
|---|
| Symbol | |
|---|
| ID | 1183746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2268366 |
|---|
| End bp | 2271122 |
|---|
| Gene Length | 2757 bp |
|---|
| Protein Length | 918 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637393478 |
|---|
| Product | helicase/SNF2 family domain protein |
|---|
| Protein accession | NP_791922 |
|---|
| Protein GI | 28869303 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCGTCCA TTCTCGAAAA AGTCCTGGCT TCGGCCTGGA CAGACTTATT CAACGATCGA
ACGCTTGAGC GGGGGCGCGA CTACGCCCGG CAAAAACGCA TCGTGCTGGA AGACTCCAGC
CCGCAGATCA TCCGCACCGC GTGCAGGGGC TCGGGCCTTG AAATCTATAC CCAGACTCTG
CTGTTCAAGG ACCCGGATCG CTACAAGAAT TACCTGACCT GCAAATGCAC CTGCCCGGTA
CGCAACGATT GCAAGCACTG CGTGGCCGCG CTGCTGTTTC TCAAGGACCC GCAAAACCGG
CCACTGCTGC AAGCCGCGCT GGGTTCGCAC CAGCGGGAAA CAGAGCAGCA CGTCGAGCAG
CAGATCGCGC AAAAGCCCCG GCTGCCGGAA CGCCTGATCG ATGATCTGCA ACCGCGCCCC
AGGCTGATTC TGGCCAGTAT CGAGTTCAGC GCCTACGAGC CACGTAACGG GCGCATGCAG
CGGCATATTC AACATCGTGC CGCGCTCGCC TTTGCCTACG GCAAGCATTA CGCCGTTGGC
ACCACCAACG TGAGCATTCT GGTCAGTTCG CTGGGCAGTG ATCTGGTCAA CCAGAAAAGC
GATATCATCG AACACACCGA AACCGAGACG CTGCGCATAC GTCGTCAGGG CGAAAAAGAG
CGGCAGCTGC GTCAGGAGCT GGCCGACCTG GGCTTCAAGG TCGCCACCCG GCAGAGCAAG
GCGTTGCCTG ACAGCGCGGG CGACATGTAC GAGCTGCCCA ACGACAAGGC CTGGCTGCAT
TTCGTGCTTG ATGACCTGCC ACGGTTGCGC GAACAGGGTT GGGAAATCGA GATTCAGGAA
GAATTCGGCT TTGACGTCAC GCCGGTCGAT GACTGGTATG CAGTCATCGA CGAAGAGACC
GAACGCGACT GGTTCGACCT GGAACTGGGC ATCATCGTCA ACGGTGAACG CCTGAGCCTG
CTGCCGATCC TGATCAACCT GATCCGCAGC CACCCCGAAC TGATGAGCCC GTCGGCGGTG
GCCAAGCGCG GCGACGAAGA ACAACTGCTG GTCCAGCTCA ACCACTTCAC CCAGAGCGGT
GGCAGCCCGG TGCAGATTGC CCTGCCATAC GGCCGGCTCA AGCCGGTACT GGCGACATTG
GGTGACTTCT ACTGGCGGCA GGACGGCAAC AACGCGCTGC GCATGAGCAA AGCCGATGCG
GCGCGCCTGA CCCAGCTCGA AGACCTGCCA CTCACCTGGC AGGGCGGCGA CCGTCTGCGC
CATTTCGCCG AGCGCCTGAT CAACATCAAG GACGCGCCGG TCAACCTGCC CGACGGCCTG
AATGCCACAC TGCGTCCGTA TCAGCTGGAA GGCCTGAGCT GGATGCAGTC ATTGCGCGAG
CTGGAAGTCG GCGGCGTGCT GGCCGATGAC ATGGGCCTGG GCAAGACCCT GCAGACCCTG
GCTCACCTGC TGATGGAAAA ACAGGCCGGA CGCCTTGACC GCCCTGCGCT GGCCGTCATG
CCGACCAGCC TGATTCCCAA CTGGCTGGAT GAAGCCGAGC ACTTCACCCC GGACCTCAAG
GTGCTGGCGC TGTATGGCGC CAATCGCCAT CAGGACGCGG GCAATCTACA GGATTACGAT
CTGATCCTGA CCACTTACGC ACTGCTGCCC CGGGACATGG AGATGCTCGA AAAGCAGCCG
CTGCATGTGC TGATTCTCGA TGAAGCGCAG TACATCAAGA ACCCCAACAG CAAGGCCGCG
CAGGCCGCGC GCAACCTCAC TGCCCGTCAG CGCCTGTGCC TGAGCGGTAC GCCGCTGGAA
AACCACTTGG GCGAGCTGTG GTCGCTGTTC CACTTCCTGA TGCCCGGCTG GCTGGGCAAC
AGCAAGGAAT TCAACAGCAA CTACCGCACG GCCATTGAAA AGCACGGCAA TCAGGACCGC
CTGCATCACC TCAATGCGCG CATCAAGCCG TTCCTGCTGC GCCGTACCAA GGAACAGGTC
GCCACCGAAC TGCCGCCCAA AACCGAGATC ATTCACTGGG TCGACCTCAA CGACGCCCAG
CGCGATGTGT ACGAAACCGT GCGCCTGGCG ATGGACAAGA AAGTCAGGGA CGAGATCACC
CGCAAGGGCG TGGCGCGCAG CCAGATCATC ATTCTGGAGG CGCTGCTCAA GCTGCGTCAG
GTGTGCTGCG ACCTGCGGCT GGTCAACCAC GACATGCCGG TCAACAGCAA ACAAGGCACG
TCAGGCAAGC TCAACAGCCT GATGGAAATG TTCGAAGAAC TGCTGGCCGA GGGCCGCAAG
ATCCTGCTGT TCTCGCAGTT CACCTCGATG CTGAGCCTGA TCGAAGAAGA ATTGAAACAG
CGCGGCATTG CCTACGCACT GCTGACCGGC TCGACCCGCG ACCGACGCAC GCCGATTCAC
GACTTCCAGA GCGGCAAGCT GCCGATCTTC CTGATCAGCC TGAAAGCCGG CGGCACCGGC
CTCAACCTGA CCGCCGCCGA CACCGTGATC CACTACGACC CATGGTGGAA CCCGGCAGCG
GAAAATCAGG CGACCGACCG CGCCTACCGC ATCGGCCAGG ACAAACCGGT GTTCGTTTAC
AAGATGATCG CGCGCGGCAC CGTGGAAGAG AAAATCCAGC GCCTGCAACG GGAAAAATCC
GCGCTGGCAG CCGGCGTACT GGATGGCCGT ACCACCGGCG ACTGGAAGCT GCGCGATGAA
GACCTGCAGG CCCTGTTCGC GCCCTTGCCT GCCGCGCCAA AGAAGACCCG CAAGTGA
|
|---|
| Protein sequence | MSSILEKVLA SAWTDLFNDR TLERGRDYAR QKRIVLEDSS PQIIRTACRG SGLEIYTQTL
LFKDPDRYKN YLTCKCTCPV RNDCKHCVAA LLFLKDPQNR PLLQAALGSH QRETEQHVEQ
QIAQKPRLPE RLIDDLQPRP RLILASIEFS AYEPRNGRMQ RHIQHRAALA FAYGKHYAVG
TTNVSILVSS LGSDLVNQKS DIIEHTETET LRIRRQGEKE RQLRQELADL GFKVATRQSK
ALPDSAGDMY ELPNDKAWLH FVLDDLPRLR EQGWEIEIQE EFGFDVTPVD DWYAVIDEET
ERDWFDLELG IIVNGERLSL LPILINLIRS HPELMSPSAV AKRGDEEQLL VQLNHFTQSG
GSPVQIALPY GRLKPVLATL GDFYWRQDGN NALRMSKADA ARLTQLEDLP LTWQGGDRLR
HFAERLINIK DAPVNLPDGL NATLRPYQLE GLSWMQSLRE LEVGGVLADD MGLGKTLQTL
AHLLMEKQAG RLDRPALAVM PTSLIPNWLD EAEHFTPDLK VLALYGANRH QDAGNLQDYD
LILTTYALLP RDMEMLEKQP LHVLILDEAQ YIKNPNSKAA QAARNLTARQ RLCLSGTPLE
NHLGELWSLF HFLMPGWLGN SKEFNSNYRT AIEKHGNQDR LHHLNARIKP FLLRRTKEQV
ATELPPKTEI IHWVDLNDAQ RDVYETVRLA MDKKVRDEIT RKGVARSQII ILEALLKLRQ
VCCDLRLVNH DMPVNSKQGT SGKLNSLMEM FEELLAEGRK ILLFSQFTSM LSLIEEELKQ
RGIAYALLTG STRDRRTPIH DFQSGKLPIF LISLKAGGTG LNLTAADTVI HYDPWWNPAA
ENQATDRAYR IGQDKPVFVY KMIARGTVEE KIQRLQREKS ALAAGVLDGR TTGDWKLRDE
DLQALFAPLP AAPKKTRK
|
|---|
| |