Gene PSPTO_1970 details

Gene Information

• Locus tag: PSPTO_1970
• Symbol: fliN
• ID: 1183615
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2156222
• End bp: 2156680
• Gene Length: 459 bp
• Protein Length: 152 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637393348
• Product: flagellar motor switch protein FliN
• Protein accession: NP_791793
• Protein GI: 28869174
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1886] Flagellar motor switch/type III secretory pathway protein
• TIGRFAM ID: [TIGR02480] flagellar motor switch protein FliN

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.18125
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGATG AAAATGATAT GACGTCTGCT GAAGATCAGG CGTTGGCCGA TGAGTGGGCT 
GCTGCGTTGG GCGAAGCGGG CGACAGCCAG GCTGACATTG ACGCGTTGCT GGCGGCGGAC 
GCCGGGAATT CGGGCAGCCG GATGACCATG GAAGAGTTCG GCAGTGTGCC GAAAAGCGCT 
GGCCCGGTGA CTCTGGATGG TCCGAACCTG GACGTGATCC TCGACATTCC GGTGTCGATC 
TCCATGGAAG TGGGCAGCAC CGACATCAAC ATTCGCAACC TGTTGCAGCT TAACCAGGGC 
TCGGTGATCG AGCTGGACCG TCTGGCAGGC GAGCCGCTGG ATGTGCTGGT CAACGGCACG 
CTCATCGCCC ACGGCGAGGT GGTGGTGGTC AACGAAAAGT TCGGCATCCG TCTGACTGAC 
GTGATCAGCC CGAGCGAACG CATCAAGAAG CTGCGCTGA 

 

Protein sequence

MADENDMTSA EDQALADEWA AALGEAGDSQ ADIDALLAAD AGNSGSRMTM EEFGSVPKSA 
GPVTLDGPNL DVILDIPVSI SMEVGSTDIN IRNLLQLNQG SVIELDRLAG EPLDVLVNGT 
LIAHGEVVVV NEKFGIRLTD VISPSERIKK LR