Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1861 |
Symbol | |
ID | 1183506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2034565 |
End bp | 2035377 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637393240 |
Product | oxidoreductase, short chain dehydrogenase/reductase family |
Protein accession | NP_791685 |
Protein GI | 28869066 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0952097 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCACAT CGTCCAAAAA AACCGCCATC GTCACCGGCG CATCCTCCGG TATCGGTCGC GCGACGGCCG AAGCGCTGGT GCGGGCGGGC TATACCGTAT TTGGCACAAC CCGCAAGGTC GGCGACAGCT CGACGCAAGT GTCGATGCTC ACGTGCGACG TGACCAACGA TGAGTCTGTC GCCACGCTCG TTTCCACCGT ACTCGCGCGG ACCGGGCGCA TCGACCTGCT GGTCAACAAC GCCGGTATTG GCCTGGTGGG GGGTGCTGAA GAGTTTTCGA TCCCACAGGT GCAGGCACTG TTCGATGTCA ACCTGTTCGG CGTCATCCGC ATGACCAACG CAGTACTACC ATCGATGCGC CAACGTGGCG AAGGACGCAT CATCAATATC GGCTCGATCC TGGGCTTGAT ACCCGCGCCC TACTCTTCTC ATTATTCGGC GGTCAAGCAC GCGGTGGAGG GCTATTCGGA GTCACTTGAT CACGAAGTTC GCGCCTTCAA TATCCGGGTC TCGGTCGTCG AGCCGGGATT TGTGCGAACC GTCTTCGATC AAAACGGCAT TGAGCCGGAT TCGCCCCTGA AGGAATACGA TCAGGCCCGC GCCGGGTTCA AGGCATTGCT GGCCGATGTC ATGCCAAAAG CCGACCTGCC GGAAGTGGTG GCGGCGGTCG TGCTGAAGGC GGCGAACGAC ACCCGCCCAA AGCATCGCTA CACGGCCGGC AAGAGCGCTC GACAAATCAG CCTGCTGCGC CGGTTTGTGC CGACGGCGGC GTTTGACAAA AGTTTGCGCA AGCAACTTCG TTTGCCGGTT TAA
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Protein sequence | MSTSSKKTAI VTGASSGIGR ATAEALVRAG YTVFGTTRKV GDSSTQVSML TCDVTNDESV ATLVSTVLAR TGRIDLLVNN AGIGLVGGAE EFSIPQVQAL FDVNLFGVIR MTNAVLPSMR QRGEGRIINI GSILGLIPAP YSSHYSAVKH AVEGYSESLD HEVRAFNIRV SVVEPGFVRT VFDQNGIEPD SPLKEYDQAR AGFKALLADV MPKADLPEVV AAVVLKAAND TRPKHRYTAG KSARQISLLR RFVPTAAFDK SLRKQLRLPV
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