| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1801 |
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| Symbol | trkH |
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| ID | 1183442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1972879 |
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| End bp | 1974333 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637393177 |
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| Product | potassium uptake protein TrkH |
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| Protein accession | NP_791626 |
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| Protein GI | 28869007 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.641993 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTTGC CGACCTTTCG CATTATCGGT TTCATTATCG GCATCTTCCT GATCACCCTG
GCTGTGGCCA TGATCGTGCC GATGGCCACG CTGGTCATCT ACGACCGCTT CGAAGACCTG
CGCTCGTTTC TGTGGGCCAG CGCCATCACC TTTATCGCAG GCCTTGCGCT GGTGGTGCCC
GGACGCCCCG ACAACGTCCA GTTACGCCCT CGTGACATGT ACATGCTCAC GGTTTCCAGC
TGGATCGTGG TGTGCATCTT CGCTGCCCTG CCCTTTCTGC TGACCCAGCA CATCAGCTAC
ACCGACTCAT TTTTTGAAAG CATGTCGGGC ATCACCGCCA CCGGTTCGAC GGTGCTCAGC
CATCTGGATA GCATGTCGCC GGGTATTCTG ATCTGGCGTT CGATGCTCCA CTGGCTGGGC
GGTATCGGTT TCATCGGTAT GGCCGTGGCG ATTCTGCCGT TGCTGCGCAT CGGCGGCATG
CGCCTGTTTC AGACCGAATC GTCGGACCGC TCGGAAAAGG TCATGCCCCG CTCGCACATG
GTGGCCAAGT TCATCGTGCT GGCCTACGTC GGCTTTACCG CGCTGGGCAG TCTGGCGTTC
TGGGCGGCGG GCATGAGCCT GTTCGATGCG ATCAACCACG CGATGTCGGC GATTTCCACG
GGCGGTTTCT CCACTTCCGA CCTGTCGCTG GCCAGGTGGC CGCAGCCTGC GGTGCACTGG
GTGGCGATTG TGGTGATGAT TCTCGGTAGC CTGCCGTTCA CGCTGTATGT CGCCACGCTG
CGCGGCAACC GCAAGGCGTT GATCAAGGAT GAACAGGTGC AGGGATTGAT CGGCCTGTTG
CTGATCACCT GGTTGGTGAT GACGGTGTGG TACGCCAACA CCACTGACTT GCCGTGGACC
GAAGCGCTGC GCCATGTGGC GCTGAACGTG ACGTCGGTGG TAACCACTAC GGGTTTTGCA
CTGGGTGACT ACAGCCTGTG GGGCAATTTC TCGCTCATGC TGTTCTTTTA TCTGGGTTTT
ATCGGTGGCT GTTCCGGTTC GACGGCAGGC GGGGTAAAGA TTTTCCGCTT TCAGGTCGCT
TATATTCTGC TCAAGACCAA CCTTAATCAG TTGATTCACC CACGCGCGGT GATGAAGCAG
AAATACAACG GGCATCGACT GGACGACGAA ATCGTTCGCT CGATTCTGAC CTTTTCGTTC
TTTTTCACGA TCACCATCTG CCTGATTGCG TTGATGCTGT CGCTGCTCGG GCTGGACTGG
ATGACTGCGC TGACGGGTGC GGCCAGTACG GTTTCCGGTG TCGGGCCCGG GCTGGGCGAG
GTCATTGGCC CGGCGGGTAA CTTCTCCACC CTGCCGGATG CTGCCAAGTG GATTCTGTCC
GGCGGTATGC TGCTCGGCCG TCTGGAGATT ATTACCGTGC TGGTGTTGTG TGTGCCGGCG
TTCTGGCGGC ATTGA
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| Protein sequence | MSLPTFRIIG FIIGIFLITL AVAMIVPMAT LVIYDRFEDL RSFLWASAIT FIAGLALVVP
GRPDNVQLRP RDMYMLTVSS WIVVCIFAAL PFLLTQHISY TDSFFESMSG ITATGSTVLS
HLDSMSPGIL IWRSMLHWLG GIGFIGMAVA ILPLLRIGGM RLFQTESSDR SEKVMPRSHM
VAKFIVLAYV GFTALGSLAF WAAGMSLFDA INHAMSAIST GGFSTSDLSL ARWPQPAVHW
VAIVVMILGS LPFTLYVATL RGNRKALIKD EQVQGLIGLL LITWLVMTVW YANTTDLPWT
EALRHVALNV TSVVTTTGFA LGDYSLWGNF SLMLFFYLGF IGGCSGSTAG GVKIFRFQVA
YILLKTNLNQ LIHPRAVMKQ KYNGHRLDDE IVRSILTFSF FFTITICLIA LMLSLLGLDW
MTALTGAAST VSGVGPGLGE VIGPAGNFST LPDAAKWILS GGMLLGRLEI ITVLVLCVPA
FWRH
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