Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1736 |
Symbol | |
ID | 1183373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1902001 |
End bp | 1903827 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637393108 |
Product | ABC transporter, ATP-binding/permease protein |
Protein accession | NP_791561 |
Protein GI | 28868942 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.609322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGTGATG ATTTGCCCGA AGGTGCTCAC CCATCGTCAG TCGGCCATCG CGATACGCTG AGCTGGGCCG AGATCCGTCG TCTTGCGCTG CGCCATAAAA AAGCCCTGTG GCTGGCCAAT GGCGTCGCAG TTCTGGCGAC CCTGTGCAGC GTGCCGATCC CGTTGCTGTT GCCGTTGCTG GTCGACGAAG TATTGCTGGG GCGCGGCGAC GCTGCCCTCA ACGTCATGAA CCACCTGCTG CCTGACAGCT TGCAAAAAGC TGTGGGTTAC ATCGGCCTGA TGCTCTTGCT GACGCTGGTG CTGCGGGTCG GGGCGCTGGT GTTCAATGTG TTGCAGGCGC GGCTGTTTGC CGGGCTGGCC AAGGATATTG TCTATCGCAT CCGGCTGCGT CTGATCGAGC GCCTCAAGCG GATTTCCCTG CGCGAATACG AAAGCCTGGG CAGCGGCACA GTCACCACGC ATCTGGTGAC CGACCTGGAC ACGCTGGACA AGTTCGTCGG CGAGACCCTC AGTCGCCTGC TGGTGTCTAC GCTGACCCTG GCCGGCACGG CGGGCATCCT GATGTGGATG CACTGGAAGC TGGCCCTGCT GATCATGCTC TTCAACCCGT TGGTGATTCT GCTCACGGTG AAGCTGGGCA AGCGGGTCAA ACACCTCAAG AAACTGGAAA ACGACAGTAC CTCGCGGTTC ACTCAGGCGC TGAGCGAAAC CCTGGATGCG ATTCAGGAGG TCAGGGCAGG CAACCGGCAG GGCTTTTTCC TCGGGCGTCT GGGCGCAAAA GCGCAGGAAG TTCGCGATTA CGCGATCAAT TCACAGTGGA AAAGCGACGC TTCCGGGCGG GCCAGCGGGC TGCTGTTCCA GTTCGGCATC GACATCTTTC GCGCGGCGGC AATGCTCACC GTGCTGTTCT CGGACCTGTC CATCGGGCAG ATGCTCGCGG TCTTCAGTTA CCTGTGGTTC ATGATGACGC CGGTTGAGCA ACTGCTGAAC CTGCAATACG CCTATTACGC GGCGGGCGGG GCTCTGACGC GCATCAACGA ACTGCTCGCG CGTGCCGACG AGCCGCACTA CGCGGGCGGC GCGGACCCTT TCAAGGGGCG CGAAACGGTC AGTGTCGAGG TGCGCGGTCT GAGTTTCGGC TATGGCGAGG ATCTGGTGCT GGACCAACTG AACCTGAGCA TTGCACCGGG CGAGAAGGTC GCCATTGTCG GTGCCAGTGG TGGCGGCAAG AGCACCCTGG TGCAGTTGCT GCTGGGCCTG TACACGGCCC GTACCGGAGT CATCCGCTTT GGTGGCGTCA GTCAGCAGGA TATCGGTCTG GACACAGTGC GTGAGAACGT CGCCGTGGTC CTGCAGCACC CGGCACTGTT CAACGACACT GTGCGCGCCA ACCTGACCAT GGGCCGTGAC TGCAGCGACG AAGCCTGCTG GAGGGCGCTG GAGGTTGCGC AACTGGAATC GGCCATTCGC GACCTGCCGC AAGGCCTGGG CAGCGTGCTG GGGCGTTCCG GTGTGCGCCT GTCTGGCGGG CAGCGCCAGC GCCTGGCCAT CGCGCGCATG GTGTTGTCCG ATCCGAAAGT GGTCATCCTC GACGAAGCGA CCTCGGCGCT GGACGCCGCC ACCGAGTTCA ACCTGCACCA GGCCCTGGCG CGGTTTCTGC GCAGCCGCAC AACGCTGATC ATCGCCCATC GTCTGTCAGC CGTTAAGCAG GCGGACCGGG TGCTGGTGTT CGACGGCGGG CGAATCGTCG AAGACGGCGA CCATCAGCAA CTGATTGCCG ATGGAGGTCT TTACGCCAAG CTGTACGGAC ATCTGCAACA AATCTGA
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Protein sequence | MRDDLPEGAH PSSVGHRDTL SWAEIRRLAL RHKKALWLAN GVAVLATLCS VPIPLLLPLL VDEVLLGRGD AALNVMNHLL PDSLQKAVGY IGLMLLLTLV LRVGALVFNV LQARLFAGLA KDIVYRIRLR LIERLKRISL REYESLGSGT VTTHLVTDLD TLDKFVGETL SRLLVSTLTL AGTAGILMWM HWKLALLIML FNPLVILLTV KLGKRVKHLK KLENDSTSRF TQALSETLDA IQEVRAGNRQ GFFLGRLGAK AQEVRDYAIN SQWKSDASGR ASGLLFQFGI DIFRAAAMLT VLFSDLSIGQ MLAVFSYLWF MMTPVEQLLN LQYAYYAAGG ALTRINELLA RADEPHYAGG ADPFKGRETV SVEVRGLSFG YGEDLVLDQL NLSIAPGEKV AIVGASGGGK STLVQLLLGL YTARTGVIRF GGVSQQDIGL DTVRENVAVV LQHPALFNDT VRANLTMGRD CSDEACWRAL EVAQLESAIR DLPQGLGSVL GRSGVRLSGG QRQRLAIARM VLSDPKVVIL DEATSALDAA TEFNLHQALA RFLRSRTTLI IAHRLSAVKQ ADRVLVFDGG RIVEDGDHQQ LIADGGLYAK LYGHLQQI
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