Gene PSPTO_1715 details

Gene Information

• Locus tag: PSPTO_1715
• Symbol: cobT
• ID: 1183352
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1884912
• End bp: 1885964
• Gene Length: 1053 bp
• Protein Length: 350 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637393087
• Product: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
• Protein accession: NP_791540
• Protein GI: 28868921
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG2038] NaMN:DMB phosphoribosyltransferase
• TIGRFAM ID: [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAATT CCTGGTGGCT CAAACCTGCA CAGGCCATTG ACGTACCGAT GCGCGAAGCG 
GCACTGGCGC GTCAGCAACA ACTGACCAAG CCCGCCGGTT CGCTGGCACA ACTGGAGCGC 
TTGGCAGTGC AGCTTTCCGG GCTGCAAGGG CGCGAGCGTC CGGCTGCCGA CAAACTGTGG 
ATCGCAATCT TTGCCGGTGA CCATGGCGTG GTCGCGGAAG GTGTGTCGGC ATATCCACAG 
GAAGTCACCG GGCAAATGCT GCATAACTTC GTCAATGGCG GCGCAGCCAT CAGCGTGCTG 
GCGCGGCAGC TTTCGGCGCA ACTGGACGTG GTGGATCTGG GCACGGTGTC GCCGATGGAT 
TTGCCCGGTG TACGCCATTT GCGTATCGGC GCGGGCACGG CCAACTTTGT CGACGGGCCG 
GCCATGACGG TCGAGCAGGG CCTTGCTGCC TTGCAGGCCG GGCGTGACAG CGTGTTGCGC 
GCCAAGGCGG TCGGCACCGA GCTGTTCATC GGCGGTGAAA TGGGCATTGG TAACACCGCT 
GCGGCCAGCG CCGTGGCCTG CTCGGTGCTG GAATGTGCCG CGCCGTTGCT GGTCGGCCCC 
GGCACCGGGC TGAACGCCGA AGGCATTGTG CACAAGACCC GGGTCATCGA GCGCGCCTTG 
GCGTTGCATG CCGAACATGC GGGCGACCCG TTGCAGAGCC TGTTCTGCCT GGGTGGCTTC 
GAGATCGCTG CATTGACCGG CGCTTATCTG GCCTGCGCGC AGGAAGGCAT CGTGGCAATG 
GTCGATGGCT TCATCTGCAG CGTGGCCGCA CTGGTGGCGG TGCGCTTGAA CCCATCCTGC 
CGCGACTGGC TGCTGTTTGG TCATCGCGGT GCCGAGCCTG GGCATCGGCA CTTGCTGGAA 
ACCCTGCAGG CCGAACCGCT GCTTGACCTG GGTCTGCGCC TGGGCGAGGG CAGCGGTGCG 
GCACTGGCCG TGCCACTGGT GCGTCTGGCC TGCGAGCTGC ACAACGGCAT GGCGACGTTT 
GCCGAGGCTG CCGTGGCAGA TCGCCCGGCA TGA 

 

Protein sequence

MSNSWWLKPA QAIDVPMREA ALARQQQLTK PAGSLAQLER LAVQLSGLQG RERPAADKLW 
IAIFAGDHGV VAEGVSAYPQ EVTGQMLHNF VNGGAAISVL ARQLSAQLDV VDLGTVSPMD 
LPGVRHLRIG AGTANFVDGP AMTVEQGLAA LQAGRDSVLR AKAVGTELFI GGEMGIGNTA 
AASAVACSVL ECAAPLLVGP GTGLNAEGIV HKTRVIERAL ALHAEHAGDP LQSLFCLGGF 
EIAALTGAYL ACAQEGIVAM VDGFICSVAA LVAVRLNPSC RDWLLFGHRG AEPGHRHLLE 
TLQAEPLLDL GLRLGEGSGA ALAVPLVRLA CELHNGMATF AEAAVADRPA