| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1706 |
|---|
| Symbol | |
|---|
| ID | 1183343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1875977 |
|---|
| End bp | 1876522 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637393078 |
|---|
| Product | lipoprotein, putative |
|---|
| Protein accession | NP_791531 |
|---|
| Protein GI | 28868912 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATTG TTTTGCGCCT GATGGTCATC TGTGTTGCCG CGTTGCTGGG CGCTTGTGCC
AGCGCGCCGC CACCGCCCAA AGTACCCCGG ATTGTTCAGC GTCCGGTGGT CACCGCTCCC
CCTCAGATTC TTTCTCCGGC TGCCGAAGAC GTGCTGTTTC GTGCGTTGGG CCTGGTCGGC
ACGCCCTATC GCTGGGGCGG CAACACGCCA GATTCCGGTT TCGATTGTAG CGGCCTTATA
GGCTATGTCT ATCGTGATGC GGCGGGCATT TCCCTGCCAC GTTCCACCCG CGAGATGATC
GTGATGGGTG TGCCGAATAT TCGTCGCGAG CAGTTGCAGT CGGGTGACCT GGTATTTTTC
GCCACCTCGG GCGGTTCGCA AGTGTCCCAC GCGGGCATCT ACGTCGGCGA AGGCCGCTTC
GTGCATGCCC CCGCCACCGG CGGCACAGTC AAACTCGACA GCCTCGACAA GCCTTACTGG
CAGAAAGCCT ACCTCAACGC CAAGCGCGTG ATTCAGCCAG CAAGCCTGGC GCAGATTCGA
CCGTAG
|
|---|
| Protein sequence | MSIVLRLMVI CVAALLGACA SAPPPPKVPR IVQRPVVTAP PQILSPAAED VLFRALGLVG
TPYRWGGNTP DSGFDCSGLI GYVYRDAAGI SLPRSTREMI VMGVPNIRRE QLQSGDLVFF
ATSGGSQVSH AGIYVGEGRF VHAPATGGTV KLDSLDKPYW QKAYLNAKRV IQPASLAQIR
P
|
|---|
| |