| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1660 |
|---|
| Symbol | |
|---|
| ID | 1183297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1827359 |
|---|
| End bp | 1829776 |
|---|
| Gene Length | 2418 bp |
|---|
| Protein Length | 805 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637393032 |
|---|
| Product | helicase/SNF2 family domain protein |
|---|
| Protein accession | NP_791485 |
|---|
| Protein GI | 28868866 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGC GCATGCTGGC CTACGCCATA AAAGTGTGGA ATGAAAACAC CGGTGCCCTT
TCCCACCTAG AGATTGAACC ACTGCCTCAT CAGATTCACC TGGTTCACCA CATCCTCGCA
TCCGGCAACT TCAACTGGCT GATTGCGGAC GATGTGGGTT TGGGAAAGAC CATCGAGACC
GGTATGTTGC TGCATGCACT GCGGCAACGA GACCTAGTCA AACGCATCCT TCTGATCACG
CCCGCGGGCC TGACCAAACA GTGGCAGGAA GAGCTATATT ACAAGTTCAA GCTCGAAGAT
TTCGAGATCT ATGGCGAGGA CTTTTTCATT AATGAACCCC GCCAATGGAA GATGCACGAC
TGTGTCATCG GCTCTATGGA TCGACTCAAG CAGGAGGATC ACTTGGAAAG CCTGCTTCAG
GCTGAGCCTT GGGATCTGGT AATTTTTGAC GAAGGCCATC GACTCAGCCG CCGCCAGTAC
GGGCAAAAAC TGGACAGCTC TGAGCGCTAT GACCTGGCGA AAAACTTACG CAGTCGAACC
AAGCACATGC TGCTGCTGAG TGCGACCCCT CACCAGGGCA TGCAGGACAA GTTCGTGGCA
CTGCTAGAGC TGCTTCGCCC TGAGCGCCGT ACGGAATTGA TGGCGCTCAA CCTGAAACCA
GAAATTCTGC ACGACATGGT ATTCCGCAAC CACAAAGCTG ACGTAACAGA CGCAGAAGGG
AACTTCATCT TCCAAGGCAA AATCACCAGT GTTTTGCAGG TGCCCAGCAG CCTGGGGTCC
GTCGAGTTCG ATAAAACGCT TCAGGACTAT CTGCGCAAAG GCTATGCCGC AGGTGAGTCG
CTAGGCCTTA AAGGCAACGC TATTGGTTTC GTCATGACTG TTTATCGCAA ACTGGCTGCC
TCCAGCGCAG CAGCTATTCA CCGGGCGCTT TGTAATCGCC TTAAGCGCCT GATCGACGAT
CAAGAAAATG GTACGTTCGC AGACGAGCCT AGCGACGAAC GCTACCTGGG TGAGTGGGAA
GAACAATTCA CCAGTGATGC ACGCGAGTTC TTTGCTGGCG AGGTGCAGTT GCTAAAAGGT
TTGATTGCTG AGGCCGCGGC GTTGAAAGCC AATGACCTTA AACTGAAGCT GTTTATCGAA
GAAATCATCG GCAAAATTCA CGTAGCCAAC CCTGATGAGA AAGTGCTGAT TTTTACTGAA
TATCGCACCA CCCAACGCTA CATGCGGGAT GCCTTAGCTA ATCACTATGG CGGCGACCAG
GTCGAGCTAA TCAATGGCTC CATGCGGCAT GCTGAGCGAC GAGAGGCCAT CAAGCGTTTT
GAGCAGCAAG CGCGCTTTCT GATCTCAACT GAAGCTGGCG GGGAAGGCAT CAACCTCCAG
AACCAGTGCC ACGTCATGGT CAACTATGAC CTCCCCTGGA ACCCCATGCG TCTCGTACAG
CGCATTGGTC GCCTGTATCG CTATGGGCAG AAGAAGAAGG TTGTCGTGTT CAATATCCAG
CAGACCGACA GCCTTGATCA GAATATCGTC GACCTGATGT ATGAGCGGAT CGACAGCGTG
GTGACTGATC TGGCCGAGGT TCAGCATCAT GAATTCAATG ATGGCCTGAA AGACGAAATC
CTCGGTCAAC TGGCCGAGTT GATCGATGTG GAAGATATCC TGCAACAAGC TACAAAACTT
GGCATCGACC GAACCCGAGA GCGTATTGAT GAAGCGTTAA AGCAGGCACG CACTGCTGCT
GCCAAACAAC GAGAACTGTT TGTACACGCC GCCACCAGCG ATCCAAAAGA GCTACGCGAC
GAGCTGGAAA TCACCTTTGA GCACCTCGAC AGTTTCGTCC TGGGAATGTT CGATCAACTG
GGCATCGAGG TCGCGGAGCG GAGTCATAAA GAGCGGCTTT TGCGTATTAG ATTGTCCGAG
CAGGTTATGC ACGACATGGG GCTTGCTCCC AAAGCCTCTC CGCGTATGGA CGTAACTTTG
GATCGTATGC TGGCCGCGAA CCGCCCTGAC ACCCACATGC TCGACCTCAA CTCCAAGCTT
ATGCAGTACC TGCTGGGTAA AGCGTGCGAT TATGAGTTCG GTGGGCTAGC TGCAATGCTC
AAAGCACCTG AACTCTGCGA GGGTGCACTG CTCGGTGCCA TGCTGCGCTG GCAAGGGCCG
CAGGGCAAAC GCATGCGACA GGAGTTTGTG GCCATTCATA TTAAAGATGG CAAAGCCACA
CTCAACCCTG CAATAGCCAG CCAGTGGTTG CTGACACCTG CTGAGCACAG CGCCCTGGGT
ACTGATGGCG AAACCTCAAA AATGCTATTC AAAGTCGCAG AAGAGACGGC TAACCAGCGA
CTAGCAAATG CCAGTAATCG CTACCTGATA CCCGAGAATT TGGACTGGGC TGCCGCAGGC
TGGACACAGC AGAACTGA
|
|---|
| Protein sequence | MRLRMLAYAI KVWNENTGAL SHLEIEPLPH QIHLVHHILA SGNFNWLIAD DVGLGKTIET
GMLLHALRQR DLVKRILLIT PAGLTKQWQE ELYYKFKLED FEIYGEDFFI NEPRQWKMHD
CVIGSMDRLK QEDHLESLLQ AEPWDLVIFD EGHRLSRRQY GQKLDSSERY DLAKNLRSRT
KHMLLLSATP HQGMQDKFVA LLELLRPERR TELMALNLKP EILHDMVFRN HKADVTDAEG
NFIFQGKITS VLQVPSSLGS VEFDKTLQDY LRKGYAAGES LGLKGNAIGF VMTVYRKLAA
SSAAAIHRAL CNRLKRLIDD QENGTFADEP SDERYLGEWE EQFTSDAREF FAGEVQLLKG
LIAEAAALKA NDLKLKLFIE EIIGKIHVAN PDEKVLIFTE YRTTQRYMRD ALANHYGGDQ
VELINGSMRH AERREAIKRF EQQARFLIST EAGGEGINLQ NQCHVMVNYD LPWNPMRLVQ
RIGRLYRYGQ KKKVVVFNIQ QTDSLDQNIV DLMYERIDSV VTDLAEVQHH EFNDGLKDEI
LGQLAELIDV EDILQQATKL GIDRTRERID EALKQARTAA AKQRELFVHA ATSDPKELRD
ELEITFEHLD SFVLGMFDQL GIEVAERSHK ERLLRIRLSE QVMHDMGLAP KASPRMDVTL
DRMLAANRPD THMLDLNSKL MQYLLGKACD YEFGGLAAML KAPELCEGAL LGAMLRWQGP
QGKRMRQEFV AIHIKDGKAT LNPAIASQWL LTPAEHSALG TDGETSKMLF KVAEETANQR
LANASNRYLI PENLDWAAAG WTQQN
|
|---|
| |