Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1624 |
Symbol | |
ID | 1183261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1780575 |
End bp | 1782233 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637392996 |
Product | sodium:solute symporter family protein |
Protein accession | NP_791449 |
Protein GI | 28868830 |
COG category | [R] General function prediction only |
COG ID | [COG4147] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR02711] cation/acetate symporter ActP |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.484288 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCCGGC GCCTATCAGC AGCACTTGGC CTGGCCGCAT TCGCGCCGAC CCTCTGGGCG GCAGATGCAT TGACTGGCGC AGTACAGAAA CAACCCCTGA ACGTCGCTGC GATCGTCATG TTCGTGATCT TCGTCGCGTT CACGCTGTAC ATCACCTACT GGGCCTCAAA GAAGAACAAG ACCGCATCGG ACTATTACTC GGCGGGTGGC AAGATCACCG GCTTTCAGAA TGGTCTGGCG ATTGCTGGTG ACTACATGTC GGCAGCCTCT TTTCTGGGTA TTTCCGCACT GGTCTACACC TCCGGCTACG ACGGCCTGAT CTACTCGATC GGCTTCCTGG TGGGCTGGCC GATCATTCTG TTCCTGATCG CCGAGCGCCT GCGTAACCTG GGTAAATACA CCTTTGCCGA CGTAGCCTCT TATCGCCTCA AGCAAAAAGA GATTCGCACA CTGTCTGCCT GTGGTTCGCT GGTGGTGGTG GCGTTTTATC TGATTGCGCA AATGGTCGGT GCGGGCAAGC TGATCCAGTT GCTATTTGGT CTGGACTACA CCGTTGCAGT GGTGCTGGTC GGTATTCTGA TGTGCCTTTA CGTGCTGTTC GGCGGCATGC TGGCGACCAC CTGGGTACAG ATCATCAAAG CGGTGATGCT GCTTTCCGGT GCCTCGTTCA TGGCGCTGAT GGTCATGAAA CACGTCAACT TCGACTTCAA CATGCTGTTC TCCGAGGCGA TCAAGGTTCA CCCTAAAGGT GAAGCGATCA TGAGCCCGGG CGGGCTGGTA AAAGACCCGA TCTCGGCGTT CTCGCTGGGT CTGGCGTTGA TGTTCGGTAC GGCGGGTCTG CCGCACATTC TGATGCGCTT CTTCACCGTG AGTGATGCCA AGGAAGCCCG TAAGTCGGTG CTCTACGCCA CTGGCTTTAT CGGCTACTTC TACATCCTGA CCTTCATCAT CGGTTTTGGC GCGATCCTGC TGGTCAGCAC CAACCCGGCA TTCAAGGATG CAGCGGGTGC CTTGCTGGGC GGCAACAACA TGGCGGCGAT TCACCTGGCC GATGCGGTCG GGGGCAGTCT GTTCCTGGGC TTCATTTCTG CCGTCGCCTT TGCGACCATC CTGGCGGTGG TTGCCGGTCT GACGCTGGCC GGTGCGTCGG CGGTCTCCCA TGACCTGTAC GCCAGTGTGA TCAAGGCGGG CAAAGCCAAC GAGAAAGACG AAATCCGCAT CTCGAAAATG ACCACCATTG CACTGGCTGT CGTGGCGATC CTGTTGGGTA TTGCTTTCGA AAGTCAGAAC ATCGCGTTCA TGGTGGGCCT GGCGTTCTCC GTCGCGGCAA GTTGCAACTT CCCGATACTG CTGCTTTCCA TGTACTGGAA AAACCTGACC ACCCGTGGCG CCATGATTGG TGGCTGGATG GGCCTGATCA GCGCTGTGGT GCTGATGGTG CTCGGCCCGA CCATCTGGGT GCAGATCCTG CACAACCCTA AAGCCATCTT CCCTTACGAA TACCCGGCGC TGTTCTCTAT CGCCATCGCA TTCGTGGGTA TCTGGTTCTT CTCCATCACC GACAAGTCGA AAGCGGCAGA GGGCGAACGC GCCTTGTTCT ACCCGCAGTT CGTCCGGTCG CAGACGGGGC TGGGTGCCAG CGGTGCGGTT TCTCACTAA
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Protein sequence | MIRRLSAALG LAAFAPTLWA ADALTGAVQK QPLNVAAIVM FVIFVAFTLY ITYWASKKNK TASDYYSAGG KITGFQNGLA IAGDYMSAAS FLGISALVYT SGYDGLIYSI GFLVGWPIIL FLIAERLRNL GKYTFADVAS YRLKQKEIRT LSACGSLVVV AFYLIAQMVG AGKLIQLLFG LDYTVAVVLV GILMCLYVLF GGMLATTWVQ IIKAVMLLSG ASFMALMVMK HVNFDFNMLF SEAIKVHPKG EAIMSPGGLV KDPISAFSLG LALMFGTAGL PHILMRFFTV SDAKEARKSV LYATGFIGYF YILTFIIGFG AILLVSTNPA FKDAAGALLG GNNMAAIHLA DAVGGSLFLG FISAVAFATI LAVVAGLTLA GASAVSHDLY ASVIKAGKAN EKDEIRISKM TTIALAVVAI LLGIAFESQN IAFMVGLAFS VAASCNFPIL LLSMYWKNLT TRGAMIGGWM GLISAVVLMV LGPTIWVQIL HNPKAIFPYE YPALFSIAIA FVGIWFFSIT DKSKAAEGER ALFYPQFVRS QTGLGASGAV SH
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