| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1549 |
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| Symbol | dnaE |
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| ID | 1183186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1708384 |
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| End bp | 1711905 |
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| Gene Length | 3522 bp |
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| Protein Length | 1173 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637392921 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | NP_791374 |
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| Protein GI | 28868755 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGCTT CTTTCGTTCA TCTACGCCTG CACACCGAGT ACTCGCTGGT TGACGGTCTG
GTCCGGGTCA AACCGTTGAT CAAGTCGCTG ACCAGCATGA ACATGCCTGC CGTGGCGGTG
ACCGATCAGA ACAACATGTG TTCGCTGGTC AAGTTCTACA AAGCCGCTCA GGGCTCCGGG
ATCAAGCCGA TCTGTGGCGT CGATCTGTGG CTGGCTGGCC GCGATGAAGA CGCCGCGCTC
AGTCGCATCA GCCTGCTGGC CATGAACGCC CAAGGCTATC GCAACCTCAC CGAGCTGATT
TCCCGTGGTT TCATCGAGGG TCAGCGTAAT GGCCAGATCG TCATTCAGCG CCAGTGGGTC
GCGCAAGCCA GCGAGGGCGT GATTGCGCTG TCCGCAGCCA AGGAAGGCGA GATCGGCATG
GCGCTGCTCG GTGGCAATCC AGGAGAAGCG GACGAGTTGC TGCGCGAATG GCTGACCGTG
TTTCCTGACC GCTTCTACAT AGAAGTGCAG CGTACCAATC GCGCCAATGA TGAAGAGCAT
CTGCACGCCG CGGTTGCCCT GGCCGAGCGC CACGGTGCAC CGCTGGTCGC GACCAACGAT
GTGCGCTTTA TCAACCAGGC TGATTTCGAG GCGCACGAGA CCCGCGTGTG CATCGGCGAA
GGCCGGGCGC TGGACGATCC TCGGCGCTCG CACAACTACA GCGACCAGCA GTACCTGAAA
AGCCCGGAAG AAATGGCCGA ACTGTTCAGC GATCTGCCCG AGGCGCTGGA AAACTCCGTC
GAGATTGCCA AGCGTTGCAA CATCGACGTC AAGCTGGGCA CTCACTTCCT GCCCAACTTC
CCGATCCCCG ATGGCATGAC CATCGATGAG TATTTCCGCA AGGTGTCTTT CGACGGTCTG
GAGGAGCGGC TTGCCGTCCT GATGCCCAGG GACACCACTG AAGATTACGA AACCAAACGT
CAGGTGTATG TCGATCGGCT GAATTTCGAG CTGGATATCA TCATCCAGAT GGGGTTTCCC
GGTTACTTCC TGATCGTGAT GGACTTCATT CAGTGGGCCA AGAGCAACGG CGTCCCGGTG
GGGCCAGGCC GTGGATCGGG TGCCGGGTCG CTGGTGGCTT ATGTGCAGAA GATCACCGAC
CTTGATCCAC TGGAATACGA CCTGCTGTTC GAACGTTTCC TTAACCCGGA ACGGGTTTCC
ATGCCCGACT TCGACGTCGA CTTCTGCATG GACGGTCGTG ATCGGGTCAT CGAATACGTG
GCCGAAAAGT ACGGGCGCAA TGCGGTCAGC CAGATCATCA CGTTCGGTTC CATGGCGGCC
AAGGCGGTGG TGCGCGACGT GGCGCGGGTG CAGGGCAAGT CCTATGGGCT GGCGGATCGT
CTGTCGAAGA TGATCCCGTT CGAGGTCGGT ATGACCCTCG AAAAAGCGTA CGAGCAGGAA
GAGATTCTTC GCGACTTTCT CAAGGTCGAT GAAGAGGCCG CCGAAATCTG GGAAATGGCG
CGCAAGCTTG AAGGCATTGT GCGTAACGTG GGCAAGCACG CCGGGGGCGT GGTAATCGCC
CCGACCAAGC TGACCGACTT CTCGCCGATC TATTGCGACG AGGCCGGTGA CGGTCTGGTA
ACCCAGTTCG ACAAGGACGA TGTCGAGGCA GCGGGGCTGG TGAAGTTCGA CTTCCTCGGT
CTGCGCACCC TGACCATCAT CGACTGGGCA CTCAAGACTA TCAATCGCGA TCGCGCCAAG
GTCGACGAAG CGCCGCTGGA CATCGCGTTT ATCCCGCTCG ACGACCTGCC GACCTACCAG
TTGTTGCAGC GCGCCGAAAC CACGGCGGTG TTCCAGCTTG AGTCGCGCGG CATGAAAGAG
CTGATCAAAA AGCTCAAGCC CGACTGCCTG GAAGACCTTA TCGCACTGGT GGCGCTGTTT
CGCCCCGGCC CGCTGCAATC GGGCATGGTA GACGACTTCA TCAACCGCAA ACACGGTCGC
GCCGAGTTGT CCTACCCGCA CGTCGACTAC CAGTACGAAG GCCTCAAGCC AGTACTGGCG
CCGACCTACG GCATCATTCT GTATCAGGAA CAGGTGATGC AGATCGCTCA GGTCATGGCC
GGTTACACCC TCGGTGGTGC GGACATGCTG CGCCGTGCGA TGGGCAAGAA AAAGCCCGAG
GAAATGGCCA AGCAGCGTGG CGGTTTCATT GACGGCTGCA AGTCGAACAA CATCGAGCCT
GATCTGGCCG GTAACATTTT CGACCTGGTG GAAAAATTCG CCGGTTACGG TTTCAACAAG
TCTCACTCGG CAGCCTACGG GCTGGTGTCG TACCAGACGG CCTGGCTGAA AACCCACTAC
CCGGCGCCGT TCATGGCCGC CGTGTTGTCG GCGGACATGC ACAACACCGA CAAGGTCGTA
ACCTTGATCG AAGAAGTGCG CACGATGAAG CTGCGCCTCG ACGCACCGGA CGTGAACACC
TCGGAGTTCA AGTTCACCGT AAGCGACGAC GGCCGTATTC TCTACGGGCT GGGTGCAATC
AAGGGGGTGG GTGAGGGGCC GGTCGAAGCC ATTACCGATG CGCGTCAAAA GGGGCCGTTC
AAGGACCTCT TCGATTTCTG TGCGCGTGTC GACCTCAAAA GAATCAACAA GCGAACGCTG
GACGGCCTGA TTCGCAGTGG CGCGCTGGAC CGTCTCGGCC CGTACTTCGA ACTGGAGCCC
AAGGCCTATC AGGCCAGTAT CGACCGTAAC CGTTCGGTAT TGCTGGCCGC GCTGGAAGAG
GCCATTCAAG CGGCCGAGCA GACTGCCCGA AGCCACGACA GCGGCCATTC GGACCTGTTT
GGCGGCCTGT TCGTCGAAGC GGATGCCGAC GTTTACGCCA ATCATCGCAA GACCCGCGAG
CTGAGCCTCA AGGATCGTCT GCGCGGCGAG AAGGAAACCC TGGGGCTGTA CCTGACCGGG
CACCCGATCG ATGAATACGA AGGCGAGATC CGCCGCTTTG CCCGGCAGCG AATCATCGAC
CTCAAGCCCG CCAGGGACAC CCAGACGGTT GCGGGTCTGA TCATTGCCCT GCGCGTGATG
AAAAACAAGA AGGGCGACAA GATGGGGTTC ATCACCCTGG ACGATCGCTC GGCGCGTATT
GAAGCGTCTT TGTTCGCCGA AGCGTTTCAC TCCGCCCAGT CACTGTTGCA GACCGATGCT
ATGGTAGTGG TCGAGGGCGA AGTCAGTAAC GATGACTTTT CCGGTGGCCT GCGGTTGCGC
GCCAAACGGG TGATGAGCAT CGAAGATGCG CGCACCAACC TGGCCGAGAG CCTGCGCGTG
ACGGTGCATG CCGACGCGCT CAAGGGCGAG CGACTGCGCT GGCTCGGCGA TTTGTGCAAG
CGCCATCGCG GTGCTTGTCC GATCACCGTG GATTACACCG GGCAGGACGC CCGGGCATTG
CTGCAATTGG GAGAAGCCTG GCGTATTGAT CCCGCAGACA GCTTGATTCA AGCTCTGCGT
GACCAGTTCG GACGTGAGAA CGTCTTTCTC CAGTATCGTT GA
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| Protein sequence | MPASFVHLRL HTEYSLVDGL VRVKPLIKSL TSMNMPAVAV TDQNNMCSLV KFYKAAQGSG
IKPICGVDLW LAGRDEDAAL SRISLLAMNA QGYRNLTELI SRGFIEGQRN GQIVIQRQWV
AQASEGVIAL SAAKEGEIGM ALLGGNPGEA DELLREWLTV FPDRFYIEVQ RTNRANDEEH
LHAAVALAER HGAPLVATND VRFINQADFE AHETRVCIGE GRALDDPRRS HNYSDQQYLK
SPEEMAELFS DLPEALENSV EIAKRCNIDV KLGTHFLPNF PIPDGMTIDE YFRKVSFDGL
EERLAVLMPR DTTEDYETKR QVYVDRLNFE LDIIIQMGFP GYFLIVMDFI QWAKSNGVPV
GPGRGSGAGS LVAYVQKITD LDPLEYDLLF ERFLNPERVS MPDFDVDFCM DGRDRVIEYV
AEKYGRNAVS QIITFGSMAA KAVVRDVARV QGKSYGLADR LSKMIPFEVG MTLEKAYEQE
EILRDFLKVD EEAAEIWEMA RKLEGIVRNV GKHAGGVVIA PTKLTDFSPI YCDEAGDGLV
TQFDKDDVEA AGLVKFDFLG LRTLTIIDWA LKTINRDRAK VDEAPLDIAF IPLDDLPTYQ
LLQRAETTAV FQLESRGMKE LIKKLKPDCL EDLIALVALF RPGPLQSGMV DDFINRKHGR
AELSYPHVDY QYEGLKPVLA PTYGIILYQE QVMQIAQVMA GYTLGGADML RRAMGKKKPE
EMAKQRGGFI DGCKSNNIEP DLAGNIFDLV EKFAGYGFNK SHSAAYGLVS YQTAWLKTHY
PAPFMAAVLS ADMHNTDKVV TLIEEVRTMK LRLDAPDVNT SEFKFTVSDD GRILYGLGAI
KGVGEGPVEA ITDARQKGPF KDLFDFCARV DLKRINKRTL DGLIRSGALD RLGPYFELEP
KAYQASIDRN RSVLLAALEE AIQAAEQTAR SHDSGHSDLF GGLFVEADAD VYANHRKTRE
LSLKDRLRGE KETLGLYLTG HPIDEYEGEI RRFARQRIID LKPARDTQTV AGLIIALRVM
KNKKGDKMGF ITLDDRSARI EASLFAEAFH SAQSLLQTDA MVVVEGEVSN DDFSGGLRLR
AKRVMSIEDA RTNLAESLRV TVHADALKGE RLRWLGDLCK RHRGACPITV DYTGQDARAL
LQLGEAWRID PADSLIQALR DQFGRENVFL QYR
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