Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1480 |
Symbol | hom |
ID | 1183117 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1624779 |
End bp | 1626083 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637392853 |
Product | homoserine dehydrogenase |
Protein accession | NP_791306 |
Protein GI | 28868687 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0460] Homoserine dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.270684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAACCGG TCAAAGTAGG CATATGTGGG CTGGGTACTG TCGGTGGCGG TACTTTCAAC GTACTTCAGC GTAACGCCGA GGAGATTGCC CGCCGCGCCG GGCGTGGAAT CGAAGTGGCG CAAATTGCAG TTCGTACACC AAACCCCAAC TGCCAGATTG GCAGTACGCC TACCACCAGC GATGTGTTCG CCGTTGCGAC CAACCCTGAA ATCGACATCG TCGTCGAACT GATCGGCGGA TACACTCTTG CCCGTGAACT GGTCCTCAAG GCCATCGAAA ACGGCAAGCA CGTGGTCACT GCCAACAAGG CGCTGATCGC GGTGCACGGC AACGAAATCT TCGCCAAGGC GCGTGAGAAG GGCGTGATCG TGGCGTTTGA AGCGGCTGTT GCCGGTGGTA TTCCGGTCAT CAAGGCCATT CGTGAAGGCC TGTCGGCGAA CCGTATCAAC TGGGTGGCGG GCATCATCAA CGGCACGGGT AACTTCATCC TTACTGAAAT GCGCGAGAAA GGCCGCACGT TCCCGGATGT GCTGGCTGAA GCCCAGGCGC TGGGTTACGC CGAAGTCGAC CCGACCTTTG ACGTCGAGGG GATCGATGCG GCGCACAAGC TGACCATCCT GGCTTCCATT GCCTTTGGCA TTCCGTTGCA GTTCGACAAG GCTTACACCG AAGGCATCAC CAAGCTGACG ACGGCGGACG TGAACTACGC CGAAGCGCTG GGCTACCGCA TCAAGCATCT GGGTGTTGCG CGCAGCACCG CCCAGGGCAT CGAATTGCGC GTACACCCGA CGCTGATCCC GGCCGATCGT CTGATCGCCA ACGTCAATGG CGTCATGAAC GCCGTGATGG TCAACGGTGA TGCCTCCGGT TCGACGCTGT TCTACGGTGC TGGTGCCGGT ATGGAGCCTA CCGCGTCTTC CGTCGTGGCC GATCTGGTGG ACGTGGTGCG TGCCATGACC TCTGACCCGG AAAACCGCGT GCCTCATCTG GCCTTCCAGC CTGATTCGCT GTCCGCGCAT CCGATCTTGC CGATCGAGGC GTGCGAAAGC GCCTATTACC TGCGCATCCA GGCCAAGGAT CATCCGGGCG TGCTGGCTCA GGTGGCAAGC ATCCTGTCCG AGCGCGGCAT AAACATCGAA TCGATCATGC AAAAGGAAGT CGAAGAACAC GACGGCCTGG TGCCGATGAT TCTGCTGACC CACCGTGTCG TTGAACAACG CATCAACGAC GCCATTCAGG CGCTCGAAGC GTTGCAGGAT GTGGTGGGCC CGGTAGTCCG TATTCGCGTC GAACATCTTA ATTAA
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Protein sequence | MKPVKVGICG LGTVGGGTFN VLQRNAEEIA RRAGRGIEVA QIAVRTPNPN CQIGSTPTTS DVFAVATNPE IDIVVELIGG YTLARELVLK AIENGKHVVT ANKALIAVHG NEIFAKAREK GVIVAFEAAV AGGIPVIKAI REGLSANRIN WVAGIINGTG NFILTEMREK GRTFPDVLAE AQALGYAEVD PTFDVEGIDA AHKLTILASI AFGIPLQFDK AYTEGITKLT TADVNYAEAL GYRIKHLGVA RSTAQGIELR VHPTLIPADR LIANVNGVMN AVMVNGDASG STLFYGAGAG MEPTASSVVA DLVDVVRAMT SDPENRVPHL AFQPDSLSAH PILPIEACES AYYLRIQAKD HPGVLAQVAS ILSERGINIE SIMQKEVEEH DGLVPMILLT HRVVEQRIND AIQALEALQD VVGPVVRIRV EHLN
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