Gene PSPTO_1474 details

Gene Information

• Locus tag: PSPTO_1474
• Symbol: rimM
• ID: 1183111
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1619447
• End bp: 1619986
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637392847
• Product: 16S rRNA processing protein RimM
• Protein accession: NP_791300
• Protein GI: 28868681
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.480485
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGCGA CGCCTGCATC TGCCGACGAT CTGATCGTCA TTGGCAAGAT TTACTCGGTT 
CATGGCGTTC GCGGCGAAGT GAAGGTCTAT TCCTTTACTG ATCCGATTGG AAACCTGTTG 
GACTACAAAA CCTGGACGCT TCGGCGCGAA GGCAGCGTTG AGAAACAGGT GGAGCTGGTC 
AGCGGACGCT TGCAGAGCAA GTTTCTGGTC GTAAAGCTCA AGGGTCTCGA TGATCGTGAA 
GAAGCCCGTC TTCTCTCCGG TTACGAAATC TGCGTGCCGC GCAACCTGTT CCCTGATCTG 
GACGACGGCG AGTACTACTG GTACCAGCTT GAAGGCCTCA AGGTCATCGA CCAACTCGGG 
CAATTGCTCG GAAAAATCGA TCACCTGCTC GAAACCGGTT CGAACGATGT AATGGTTGTA 
AAGCCCTGCG CGGGCAGCCT TGATGATCGT GAACGCCTGT TGCCCTATAC AGAGCAATGC 
GTGTTGGCAA TCGACATGGC CGCTGGCGAG ATGAAGGTGG AATGGGACGC GGACTTCTGA 

 

Protein sequence

MNATPASADD LIVIGKIYSV HGVRGEVKVY SFTDPIGNLL DYKTWTLRRE GSVEKQVELV 
SGRLQSKFLV VKLKGLDDRE EARLLSGYEI CVPRNLFPDL DDGEYYWYQL EGLKVIDQLG 
QLLGKIDHLL ETGSNDVMVV KPCAGSLDDR ERLLPYTEQC VLAIDMAAGE MKVEWDADF