| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1453 |
|---|
| Symbol | lsc-1 |
|---|
| ID | 1183090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1593629 |
|---|
| End bp | 1594924 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637392826 |
|---|
| Product | levansucrase |
|---|
| Protein accession | NP_791279 |
|---|
| Protein GI | 28868660 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0118885 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAATA GCAGCTCTGC TGTAAGCCAG CTCAAAAATA GTCCTCTAGT AGGTAACATC
AACTACGCAC CCACTGTCTG GTCCCGCGCC GATGCGCTGA AGGTCAATGA AAATGACCCG
ACCACCACGC AGCCACTGGT CAGTCCGGAC TTTCCGGTCA TGAGTGATAC GGTATTCATC
TGGGACACCA TGCCGCTGCG CGAGCTGGAT GGCACGGTGG TTTCGGTCAA CGGCTGGTCG
GTCATCCTGA CCCTGACGGC TGACCGTCAC CCCAATGATC CGCAATATCT CGACGCCAAT
GGCCGTTATG ACATCAAGCG TGACTGGGAA GACCGTCATG GCCGCGCACG CATGTGCTAC
TGGTACTCGC GTACCGGCAA GGACTGGATC TTTGGTGGTC GTGTAATGGC CGAGGGGGTA
TCGCCCACCA CTCGAGAGTG GGCGGGCACA CCCATACTGT TGAATGACAA AGGCGATATT
GATCTTTATT ACACCTGCGT CACACCCGGC GCAGCGATCG CCAAAGTACG TGGCCGTATT
GTGACGTCCG ATCAGGGCGT GGAGTTGAAA GACTTTACCC AGGTCAAAAA ACTGTTCGAG
GCCGACGGCA CCTATTATCA AACCGAAGCG CAGAACTCGA GCTGGAACTT TCGCGACCCC
AGTCCGTTCA TTGATCCTGA AGATGGCAAG TTGTATATGG TGTTTGAAGG CAACGTCGCC
GGTGAACGCG GCTCGCACAC AGTAGGGAGT GTCGAACTTG GCCCTGTGCC GCCGGGTCAT
GAAGACGTGG GGGGTGCCAG ATTCCAGGTG GGTTGTATCG GTCTGGCGGT CGCAAAAGAT
CTCAGTGGTG AGGAGTGGGA AATACTTCCG CCGTTGGTGA CGGCCGTCGG CGTGAACGAT
CAGACCGAGC GCCCGCACTA TGTTTTTCAA GACGGCAAAT ATTACTTGTT CACCATCAGT
CACAAGTTCA CGTATGCCGA TGGTGTTACA GGGCCAGACG GGGTGTACGG TTTTGTCGGC
GAACATTTGT TCGGTCCGTA CCGGCCAATG AACGCTTCCG GCCTGGTGCT CGGCAATCCG
CCCGAGCAGC CTTTCCAGAC GTATTCGCAC TGCGTCATGC CGAACGGCCT GGTGACTTCG
TTCATCGACA GCGTGCCCAC CATAGGCGAG GATTACCGTA TCGGCGGGAC CGAAGCGCCG
ACGGTGAGAA TCCTCTTGAA AGGGGATCGC TCGTTCGTGC AGGAAGAATA TGACTACGGT
TATATTCCTG CGATGAAGGA CGTGACGCTG AGCTGA
|
|---|
| Protein sequence | MSNSSSAVSQ LKNSPLVGNI NYAPTVWSRA DALKVNENDP TTTQPLVSPD FPVMSDTVFI
WDTMPLRELD GTVVSVNGWS VILTLTADRH PNDPQYLDAN GRYDIKRDWE DRHGRARMCY
WYSRTGKDWI FGGRVMAEGV SPTTREWAGT PILLNDKGDI DLYYTCVTPG AAIAKVRGRI
VTSDQGVELK DFTQVKKLFE ADGTYYQTEA QNSSWNFRDP SPFIDPEDGK LYMVFEGNVA
GERGSHTVGS VELGPVPPGH EDVGGARFQV GCIGLAVAKD LSGEEWEILP PLVTAVGVND
QTERPHYVFQ DGKYYLFTIS HKFTYADGVT GPDGVYGFVG EHLFGPYRPM NASGLVLGNP
PEQPFQTYSH CVMPNGLVTS FIDSVPTIGE DYRIGGTEAP TVRILLKGDR SFVQEEYDYG
YIPAMKDVTL S
|
|---|
| |