Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1451 |
Symbol | |
ID | 1183088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1592228 |
End bp | 1593409 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637392824 |
Product | hypothetical protein |
Protein accession | NP_791277 |
Protein GI | 28868658 |
COG category | [S] Function unknown |
COG ID | [COG1649] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00978092 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGACTG CGAACAAAAA TCTCAAGGCG ACCTGGGTCG CAACAGTTAC GAATCTTGAC TGGCCGTCCG CCTCATCTCT GACCATCACT GATGAGGCTG CACGTGTCAG CACACAGAAA GAAGAGTTGA CCGGCATTCT TGATGATATT GTGGCAATGA AAATGAATGC AGTGATATTC CAGGTTGTTC CCTGCGCAGA TGCACTCTAC GCATCAGATC TGCTTCCATG GTCGAAGTAC CTGACAGGTA CGCTCGGAAA AAATCCCGGC TTCGACCCAC TGGCTTATGC TGTTGAGCAG GCGCATGCTC GTCATATTGA GCTGCACGCA TGGGTGAACC CGTACCGCAT ATCAATGAAC GCCAGCGACG GCACAATGGA AGAGCTGAAT AACTCATCAT CTGACTCGCC AGCCAGTGTG TTTAATACGC ATCCTGAGTG GACTGGGACC GCAGCGAACC GCTTTGTTCT CAATCCCGGC ATACCTGAAG TTCAAGCGTG GGTTGGTAGT ATTGTTGAAG AAATTGTCAC CAAATACGAT GTTGATGCCA TTCAGTTCGA TGATTATTTT TATTATGAAA CTGCGGATTC CCTGCTGCAG GATGATGCTA CCTACCAGAC ATACAATACA ACCTTTACCA CAAAGGCCGA CTGGCGACGA AATAACACGT ATTCGCTGGT TGATGCATGC CATAAAAAAA TAGCCGCAGT TAACACGGAT GTCTTGTTTG GTATCAGCCC GGCAGGCGTC TGGCGGAATA AATCTGACGA CCCGCTGGGG TCTGATACGC AGGCAGGTGC ACCTAATTAC GATTTTGCGT ATGCAGACAC CCGGAAATGG GTAATTGACG GCATCATTGA TTATATCGCC CCACAGGTCT ACTGGCCGTT TGCCCGGGAG GTTGCCCGCT ACGACGTCAT CACACAGTGG TGGGCGGATA CCGTCAGGGG TACCGGCACA GCGTTATATG TAGGTATGGC TCTGTATAAG GTGGGAGCCG CCTCAGCAGC CGAGCCCGAC TGGACTGTTG AGGCGGGCGT GCCTGAAATG ACCCGTCAGC TTGACCTGAA TGATTCTCTA GCTGAGGTGT CCGGGTGCAT GTTATTTCGA CATATGTTTC TGCGGGCCTC ACAAACTCAG CAGGTAGTTG ACTATCTAAA GCTTCGCTGG GCCGACGTCT AA
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Protein sequence | MATANKNLKA TWVATVTNLD WPSASSLTIT DEAARVSTQK EELTGILDDI VAMKMNAVIF QVVPCADALY ASDLLPWSKY LTGTLGKNPG FDPLAYAVEQ AHARHIELHA WVNPYRISMN ASDGTMEELN NSSSDSPASV FNTHPEWTGT AANRFVLNPG IPEVQAWVGS IVEEIVTKYD VDAIQFDDYF YYETADSLLQ DDATYQTYNT TFTTKADWRR NNTYSLVDAC HKKIAAVNTD VLFGISPAGV WRNKSDDPLG SDTQAGAPNY DFAYADTRKW VIDGIIDYIA PQVYWPFARE VARYDVITQW WADTVRGTGT ALYVGMALYK VGAASAAEPD WTVEAGVPEM TRQLDLNDSL AEVSGCMLFR HMFLRASQTQ QVVDYLKLRW ADV
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