Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1317 |
Symbol | |
ID | 1182953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1449166 |
End bp | 1449948 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637392689 |
Product | fimbral chaperone protein |
Protein accession | NP_791144 |
Protein GI | 28868525 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.367695 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATGA TTGTTCAGGT GCGCAGGCTG CTGGTGGTGG TGCTTCTGGC AAGCAGCGTC GCGGCGCAAG GGGCGATAGC GCTCAGTGGA ACGCGGCTGA TCTTCGATGG CCGGTATCAC GAGGTGAGTA TCGGGGTGCG CAATCGCGGC AAGGCCGAGG CACTCGTGCA GACCTGGCTG AGCGATGCAC GTGATGACGG CGACAGGTTG CCGGCTGAAC GCAGGTCGCT GCCCTTTGTT GTCACTCCAC CTCTGACGCG CCTGTCGGCT GGCGACCGGC AGGTGCTGCG TGTGCTGTAC CAGGGCGCAG GCTTGCCGCA GGAGCGTGAA TCGTTGTTGC ATCTGTACGT GCTCGAGGTG CCCCGCCGCC AGAACGGCGT TCGACAACTG AATATTGCTG TGCGTCAGCG CATCAATGTG TTCTATCGCC CTCCCGGACT TGCCGGAGAT CCGGCCGACA CTGCCAGTGC ATTGTTGTGG GCGTTGACTT CAAACCAGTC GGCCAGCGTG GTGCTGACAG TCCACAACCC CACGCCTTAT CACGCTTCGC TGCAAGCACT GCACATCGAT GGTGTTCAGG TCGCAGAGTC ACTGTTACTG GCGCCGGGCG AACAGGTTGA ACGGGTTTTA CCCAAGAACG TAATGCCCTC TTTGCACCCT CGTTTTTCTT ACCGGGCCCT GACCGACTAT GGCGGTCAGC GACGCTACTG CGCACGGTTT AACGGGCAGG CGACCTTGAC GGCGCGCCTG CTGGAGAACA ACGCCTTTCA GGAAGAATGC TGA
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Protein sequence | MNMIVQVRRL LVVVLLASSV AAQGAIALSG TRLIFDGRYH EVSIGVRNRG KAEALVQTWL SDARDDGDRL PAERRSLPFV VTPPLTRLSA GDRQVLRVLY QGAGLPQERE SLLHLYVLEV PRRQNGVRQL NIAVRQRINV FYRPPGLAGD PADTASALLW ALTSNQSASV VLTVHNPTPY HASLQALHID GVQVAESLLL APGEQVERVL PKNVMPSLHP RFSYRALTDY GGQRRYCARF NGQATLTARL LENNAFQEEC
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