| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1285 |
|---|
| Symbol | |
|---|
| ID | 1182921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1413583 |
|---|
| End bp | 1414488 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637392659 |
|---|
| Product | regulatory protein, putative |
|---|
| Protein accession | NP_791114 |
|---|
| Protein GI | 28868495 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAGG CCCTGAGCTG GCTGATCGAA CTCGAGGGCG CCGACGATGT GCAACTGGCC
CGTTTTCAGG AATGGCTGAA TGCCGATCCC GAACACGCTC GCGCGTACCA CAAGGCCTGC
GCGGCGTGGA ACTCGCAGCC CGTCCGGCAG GCTGCCGCCG TCATCGCACA GCCATTGACA
CCCACTTCGC GGCGGCACAT CCGCACTTAC TGGAAACCGC TGGCTACCGC TGCCGTGCTG
TTGCTGGGGA TTTTCAGCTT CAGCAACCTG CCGTTGCGCC TGCAAGCCGA TCATCTGACG
GTGGTGGGTG AACGCCAACG CCTGCAACTG GCGGATGGCT CGAAGGTGCT GCTCAACACC
AATTCGGCTT TTTCCAGCAA GATCGACGAA CAACAGCGCT CGGCCCGTCT ACTGCAAGGC
GAGGCCTTTT TCGATGTCGC GCCCAGAACG GGTCTGCCAC TGGAAATCGA AGCCGGCCCG
GTGCGCATGA GTGCCAACAG CACCGAGTTT TCCGTGCGTT ATCTGGATGG CGTCGCCCAG
GTTCAGGTGC AGCGCGGGGC CGTTGATGTA CGCGCCACCC GCGGCGGCTC CAGCGTCAGC
CTGGGTGCTG GCGACAGTGT TCGCGTCGGG CCGGGCGGCT TCGGCCACCG TGAAAGGCTT
GATCCGGCAC GCGATCTGGC CTGGGTTCAG GGTCGACTGG TGTTCGACAA TTGCCCGCTG
AGCGAGGTGC TGGCCGAACT GCGTCGCTAT TATCCCGGCT GGATAATCAG CACCAACGCG
CAACTGGACC GTGTTGCAGT GACCGGGAAC TACCGCCTGG ACAACCCGCT GGACGTGGTG
CGCTCACTGG CGCAGATCAC GTCGGCAAGC CTGCACGAGA TGCCGGCGCT GCTGATTCTC
AACTGA
|
|---|
| Protein sequence | MDQALSWLIE LEGADDVQLA RFQEWLNADP EHARAYHKAC AAWNSQPVRQ AAAVIAQPLT
PTSRRHIRTY WKPLATAAVL LLGIFSFSNL PLRLQADHLT VVGERQRLQL ADGSKVLLNT
NSAFSSKIDE QQRSARLLQG EAFFDVAPRT GLPLEIEAGP VRMSANSTEF SVRYLDGVAQ
VQVQRGAVDV RATRGGSSVS LGAGDSVRVG PGGFGHRERL DPARDLAWVQ GRLVFDNCPL
SEVLAELRRY YPGWIISTNA QLDRVAVTGN YRLDNPLDVV RSLAQITSAS LHEMPALLIL
N
|
|---|
| |