Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1276 |
Symbol | gcvP |
ID | 1182912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1399420 |
End bp | 1402284 |
Gene Length | 2865 bp |
Protein Length | 954 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637392651 |
Product | glycine dehydrogenase |
Protein accession | NP_791106 |
Protein GI | 28868487 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.42567 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGACC GCATTGAACT GACCACCGCC AACGAATTCA TTGCCCGCCA CATTGGCCCG CGTGCCGCTG ACGAGCTGGC CATGCTGCAC ACCCTGGGTT TTGACTCCAT TGAAGCACTC AGCGACAGCG TGATCCCGGA AAGCATCAAG GGCACCAGCG TGCTGAACCT GCCTGCCGGG CAGAGCGAAG CCGATGCACT GGCCTCCATC AAGGCCATCG CCAGCAAGAA CCAGCTGTTC AAGACCTACA TCGGTCAGGG TTACTACAAC ACCCACACAC CCGCCCCGAT TCTGCGCAAC CTGCTGGAAA ACCCGGCCTG GTATACCGCC TACACGCCCT ACCAGCCTGA GATTTCCCAA GGCCGTCTGG AGTCGCTGCT CAATTTCCAG ACCCTGATCA GCGACCTGAC CGGCCTGCCG ATTGCCAACG CCTCGCTGCT CGACGAAGCC ACTGCCGCTG CCGAAGCGAT GACGTTCTGC AAGCGCCTGA GCAAGAACAA AGGCAGCCAG CAGTTCTTCG CCTCCAGCCA CTGCCACCCG CAGACACTCG ATGTGCTGCG CACTCGCGCC GAGCCGCTGG GCATCACCGT TGTGGTGGCC GATGAAACCG AACTGGGCGA TGTCAGCGAC TACTTTGGTG CGCTGCTGCA GTACCCGGCC AGTAATGGCG ACGTATTCGA CTACCGCGAA CTGGCCGAGC GCTTTCACGG GGCAAACGCA CTGGTGGCGG TCGCCGCCGA CCTGCTGGCC CTGACCCTGC TGACCCCGCC GGGTGAATTC GGTGCCGACG TGGCCATCGG CAGCGCGCAA CGCTTTGGCG TACCGCTGGG CTTTGGTGGC CCGCACGCGG CCTATTTCTC GACGCGCGAT GCGTTCAAGC GTGACATGCC GGGCCGTCTG GTTGGCGTGT CGGTGGATCG CCACGGCAAA CAGGCTCTGC GCCTCGCCAT GCAGACCCGC GAACAACACA TTCGTCGCGA AAAGGCCACC AGCAACATCT GCACCGCGCA AGTGCTGCTG GCCAACATCG CCAGCATGTA CGCCGTGTAT CACGGCCCGC GCGGCCTGAC ACAGATCGCC AATCGTGTGC ACCACCTGAC CGCGATCCTG GCCGAAGGCT TGAGCCAGTT GGGCCTCAAC GCCGAGCAGG CCTATTTCTT CGACAGCCTG ACTTTGCACA CTGGCGGCCG GACCGCCGCG CTGCACGCTG CCGCCCGCGC CCGCCACATC AACCTGCGCG AAATCGACGA CCAGCGTCTG GGCCTGTCGC TTGACGAAAC CACCTCGCAG TCAGCGGTCG AAGTGCTCTG GGACATTTTC GCCAGCACGG GCCAGACTCT GCCGGACTTC ACCGCATTGG CCGCCAGCGT CAAGTCGCGC CTGCCAGCAG CCTTGCTGCG CCAGTCGGCG ATCCTCAGCC ACCCGGTGTT CAACCGCTAT CACTCGGAAA CCGAGCTGAT GCGCTACCTG CGCAAACTGG CCGACAAGGA CCTGGCGCTG GACCGCACCA TGATCCCGCT CGGCTCGTGC ACCATGAAAC TCAATGCGGC CAGCGAAATG ATCCCGGTAA CCTGGGCCGA GTTCGGCAAC CTGCACCCGT TCGCCCCCGC CGAGCAAAGC GCCGGTTACC AGCAACTGAC CGACGAGTTG GAGGCCATGC TCTGCGCCGC CACCGGCTAT GACGCCATTT CGCTGCAACC CAACGCCGGT TCGCAGGGTG AATACGCCGG CCTGCTGGCC ATTCGCGCCT ACCACCAGAG CCGTGGCGAT GAACACCGCG ACATCTGCCT GATCCCTTCG TCGGCCCACG GCACCAACCC GGCGACCGCT AACATGGCCG GCATGCGCGT GGTGGTGACA GCCTGCGATG CGCGCGGCAA CGTCGACATC GAAGACTTGC GGGCCAAGGC ACTTCAACAC CGCGAGCAGC TTGCGGCGAT CATGATCACC TACCCGTCGA CCCACGGCGT GTTCGAAGAG GGCATTCGCG AAATCTGCGG CATCGTTCAT GACAACGGCG GCCAGGTCTA CATCGACGGT GCCAACATGA ACGCGATGGT TGGCCTTTGC GCTCCGGGCA AGTTCGGCGG CGACGTGTCG CACCTCAACC TGCACAAGAC CTTCTGCATT CCTCACGGCG GCGGCGGGCC GGGCGTGGGT CCGATCGGCG TTAAATCGCA CCTCGCACCG TTCATGCCGG GCCACGCACG CATGCAACGC AAGGAAGGCG CGGTCTGCGC AGCGCCGTTC GGCAGCGCCA GCATCCTGCC GATCACCTGG ATGTACATCC GCATGATGGG CGGCGAAGGT CTGAAACGCG CCTCGCAATT GGCGATCCTC AACGCCAACT ACATTTCGCG TCGCCTGGAA GAGCACTACC CGGTGCTGTA CACCGGCACC AACGGGCTGG TAGCCCACGA ATGCATCCTT GACCTGCGCC CGATCAAAGA CAGCAGCGGC ATCAGCGTCG ATGACGTGGC CAAACGCCTG ATCGACTTCG GCTTCCATGC CCCGACCATG TCGTTCCCGG TCGCTGGAAC GTTGATGATC GAGCCGACCG AAAGCGAATC CCGCGAAGAA CTGGACCGTT TCTGCGACGC CATGATCAAG ATCCGCGAAG AAATCCGCGC AGTCGAAGAC GGCACCCTGG ACAAAGACGA CAACCCGTTG AAAAACGCCC CGCATACCGC GGCGGAAATC GTCGGCCAGT GGAGCCATCC TTACAGCCGC GAGCAGGCGG TGTACCCGGT CGATTCGCTG ATCGAGAACA AGTACTGGCC TCCGGTCGGA CGCGTCGACA ACGTATTCGG TGACCGCAAT CTGGTCTGTG CCTGCCCTTC CATCGAGAGC TATCAGGAAG CCTGA
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Protein sequence | MTDRIELTTA NEFIARHIGP RAADELAMLH TLGFDSIEAL SDSVIPESIK GTSVLNLPAG QSEADALASI KAIASKNQLF KTYIGQGYYN THTPAPILRN LLENPAWYTA YTPYQPEISQ GRLESLLNFQ TLISDLTGLP IANASLLDEA TAAAEAMTFC KRLSKNKGSQ QFFASSHCHP QTLDVLRTRA EPLGITVVVA DETELGDVSD YFGALLQYPA SNGDVFDYRE LAERFHGANA LVAVAADLLA LTLLTPPGEF GADVAIGSAQ RFGVPLGFGG PHAAYFSTRD AFKRDMPGRL VGVSVDRHGK QALRLAMQTR EQHIRREKAT SNICTAQVLL ANIASMYAVY HGPRGLTQIA NRVHHLTAIL AEGLSQLGLN AEQAYFFDSL TLHTGGRTAA LHAAARARHI NLREIDDQRL GLSLDETTSQ SAVEVLWDIF ASTGQTLPDF TALAASVKSR LPAALLRQSA ILSHPVFNRY HSETELMRYL RKLADKDLAL DRTMIPLGSC TMKLNAASEM IPVTWAEFGN LHPFAPAEQS AGYQQLTDEL EAMLCAATGY DAISLQPNAG SQGEYAGLLA IRAYHQSRGD EHRDICLIPS SAHGTNPATA NMAGMRVVVT ACDARGNVDI EDLRAKALQH REQLAAIMIT YPSTHGVFEE GIREICGIVH DNGGQVYIDG ANMNAMVGLC APGKFGGDVS HLNLHKTFCI PHGGGGPGVG PIGVKSHLAP FMPGHARMQR KEGAVCAAPF GSASILPITW MYIRMMGGEG LKRASQLAIL NANYISRRLE EHYPVLYTGT NGLVAHECIL DLRPIKDSSG ISVDDVAKRL IDFGFHAPTM SFPVAGTLMI EPTESESREE LDRFCDAMIK IREEIRAVED GTLDKDDNPL KNAPHTAAEI VGQWSHPYSR EQAVYPVDSL IENKYWPPVG RVDNVFGDRN LVCACPSIES YQEA
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