Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1257 |
Symbol | |
ID | 1182893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1380544 |
End bp | 1381641 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637392632 |
Product | amino acid ABC transporter, permease protein |
Protein accession | NP_791087 |
Protein GI | 28868468 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.154586 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAACCC ATACTTTCAA ACCTGATATG CCACCACCGG GCAAAGTGTT CGGTCCGGTC GCGTGGATGC GGCAGAACCT GTTCTCCAGC TGGATCAACA CCCTGCTGAC CCTGTTCTCG CTGTATCTGA TCTACCTGAT CGTTCCGCCG ATTCTCAGTT GGGCCCTGCT GGACGCCAAC TGGATCGGTA CGACCAAGGA AGACTGCACC AAGGCGGGCG CCTGTTGGGT GTTCATCGAG CAGCGCTTCG GTCAGTTCAT GTACGGCTAC TTTCCTAATG AACTGCGCTG GAGGGTCGAT CTGACCGCAA TCCTGGCGAT TGTCGGTGCT GCGCCGCTGT TCATTTCGAA GTTTCCGCGC AAGGCTGTGT ACGGCATCTG CTTTTTGCTG ATCTACCCGG TCGTTGCGTT CTACCTGCTG CACGGCGGCG CGTTTGGTCT GACCAATGTA CCGACCAGCC AGTGGGGCGG TCTGATGCTG ACCCTGGTGA TTGCCACCGT GGGTATCGTC GGTGCCTTGC CGCTGGGTAT TTTGCTGGCG CTCGGCCGTC GCTCCAACAT GCCGGCCGTG CGTGTGGTGT GCGTGACGTT CATCGAGTTC TGGCGTGGCG TGCCGTTGAT CACCGTACTG TTTATGTCGT CTGTGATGCT GCCGCTGTTC ATGCCGGAAG GGATGAACTT CGACAAGCTG CTGCGGGCGC TGATCGGCGT GATTCTGTTC CAGTCGGCGT ACATCGCCGA AGTGGTGCGC GGCGGGATGC AGGCCATTCC CAAGGGGCAA TACGAAGCGG CCTCGGCGAT GGGCCTGGGT TACTGGCGCG CCATGGGTCT GGTGATTCTG CCGCAGGCGT TGAAGATGGT CATTCCCGGC ATCGTCAACA CCTTCATTGC TTTGTTCAAA GACACCAGCC TGGTGATCAT TATCGGCCTG TTCGACCTGC TTAACAGCGT CAAACAAGCC ACCGCCGACC CGGCATGGCT GGGTATGGCC ACCGAAGGCT ACGTCTTCGC GGCCCTGGTG TTCTGGATCT TCTGTTTCGG TATGTCCCGC TATTCCATGC ATTTGGAACA TAAGCTGGAC ACAGGCCACA AGCGTTAG
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Protein sequence | MTTHTFKPDM PPPGKVFGPV AWMRQNLFSS WINTLLTLFS LYLIYLIVPP ILSWALLDAN WIGTTKEDCT KAGACWVFIE QRFGQFMYGY FPNELRWRVD LTAILAIVGA APLFISKFPR KAVYGICFLL IYPVVAFYLL HGGAFGLTNV PTSQWGGLML TLVIATVGIV GALPLGILLA LGRRSNMPAV RVVCVTFIEF WRGVPLITVL FMSSVMLPLF MPEGMNFDKL LRALIGVILF QSAYIAEVVR GGMQAIPKGQ YEAASAMGLG YWRAMGLVIL PQALKMVIPG IVNTFIALFK DTSLVIIIGL FDLLNSVKQA TADPAWLGMA TEGYVFAALV FWIFCFGMSR YSMHLEHKLD TGHKR
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