Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1215 |
Symbol | |
ID | 1182851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1330200 |
End bp | 1331174 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637392592 |
Product | D-isomer specific 2-hydroxyacid dehydrogenase family protein |
Protein accession | NP_791047 |
Protein GI | 28868428 |
COG category | [C] Energy production and conversion [H] Coenzyme transport and metabolism [R] General function prediction only |
COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.133379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CCGTACTCGC CTTCAGCCGT GTTTCCCCCG AAATGGCCGA GCGCCTGGCG CAGGATTTCA ACGTTATCGT GCCCAATCCC AAACAGGGCG ATATCAACGC CCAGTTTGAC GAAGCCCTGC CGCACTCCCA CGGGTTGATC GGCGCAGGCC GCAAGCTGGG TCGCGAACAG CTGCACAGCG CTACCCAACT GGAAGTGGTT TCCAGTATTT CGGTGGGCTA CGACAACTAC GATGTCGACT ACCTGAGCGA GCGCGGCATT CTGCTGACCA ACACGCCGGA TGTACTGACC GAAAGCACCG CCGACCTGGG CTTCTCGCTG ATCATGAGCA GCGCCCGCCG AGTTGCCGAA CTGGACGCCT ACACCAAGGC CGGACAGTGG ACGCGCAGCA TCGAACAGCC CCATTTCGGC ACCGATGTGC ATGGCAAGAC GCTAGGTATC GTCGGCATGG GCAATATCGG CGCAGCCATT GCCCGCCGTG GTCGTCTGGG CTTCAACATG CCGATTCTGT ACAGCGGCAA CAGCCGCAAG ACTGAACTGG AACAGGAGTT GGGCGCACAG TTTCGCAGCC TGGACCAACT GCTGGCCGAG GCAGATTTCG TCTGCCTGGT GGTGCCGTTG AGCGAAAAGA CCAAACACCT GATCGGCCGT CGCGAGCTGA GCCTGATGAA GCCTGGCGCC ATTCTGGTCA ACATCGCCCG CGGGCTGATT GTCGATGAAC CGGCACTGAT CGAAGCCCTG CAGAACGGCA CTATTCGCGG CGCTGGTCTG GACGTCTACG AAAAAGAACC GCTGAGCGAA TCGCCACTGT TCCAGCTCAA GAATGCCGTC ACCCTGCCCC ACGTCGGCTC GGCCACCACG GAAACCCGCC AGGCGATGGC CGACCGCGCC TACAACAACC TGCGCAGTGC ACTGCTGGGC GAGCGTCCGC AGGATCTGGT CAATCCGCAG GTGTGGAAGG GCTGA
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Protein sequence | MKKTVLAFSR VSPEMAERLA QDFNVIVPNP KQGDINAQFD EALPHSHGLI GAGRKLGREQ LHSATQLEVV SSISVGYDNY DVDYLSERGI LLTNTPDVLT ESTADLGFSL IMSSARRVAE LDAYTKAGQW TRSIEQPHFG TDVHGKTLGI VGMGNIGAAI ARRGRLGFNM PILYSGNSRK TELEQELGAQ FRSLDQLLAE ADFVCLVVPL SEKTKHLIGR RELSLMKPGA ILVNIARGLI VDEPALIEAL QNGTIRGAGL DVYEKEPLSE SPLFQLKNAV TLPHVGSATT ETRQAMADRA YNNLRSALLG ERPQDLVNPQ VWKG
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