Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1206 |
Symbol | |
ID | 1182842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1318800 |
End bp | 1321301 |
Gene Length | 2502 bp |
Protein Length | 833 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637392583 |
Product | TonB-dependent siderophore receptor, putative |
Protein accession | NP_791038 |
Protein GI | 28868419 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.843883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCCGTC CCGCCCGTTC GCTGCACCCC TTGGCACTTG CCGTACTGAT GGCCTGTGCA GCGATGCCGT CGCACGCCGC CCAGCCTTCG TCGCCGAATG CAGACGTCAG TACGGTGCGC AGTTTCTCGA TACCGGCCGG GGATTTGAGC CAGGTGCTCA ATACGTTTTC GGAGCAGGCG GGCCTTGCGC TGGCGTTCGA CCCGGCGCTT ACCCGGGGTA AACGCAGCCC CGGTTTGCAG GGGCAGTACG GCACCGACGA GGCGATTGCC CGCTTGCTGA GCGGCAGCGG TTTGCGCGCC ACGGCATTGT CGGCCAACCG CTATCGCATC GAGACCGCGC CCGAGGCGGT GGAGGGGTCG CTGGAATTGC AGGCGACCAC CATCAGCGGC GCGTCCCGGC TGGAGACCGC TACGGGGCCT GTAACCGGTT ATGTGGCGAC GCGTGGCCTC TCGGCGACCA AGACCGACAC TGCGCTGATC GAAACCCCGC AGTCGATCTC GGTGGTGACC AAAGACCAGA TGAAAGCTCA GGGCGCGGAG AACCTCAGCC AGATGTTGCG CTATAGCGCC GCCGTGGTGC CCGAGACACG TGGCTCGACG GCTTCGCGTC TGGACATGCT GAGCATCCGC GGTTTTTCGC CTGCGCTGTA TCTGGACGGG CTGCGCATGC CGGACAACCG TGATGCCGCG CCACAGAAAG ACGTGTTCGA TCTGGAGCGT GTGGAAGTGC TGCGTGGTCC TGCGTCGGTG CTGTACGGTC AGGCCAGCCC CAGTGGTGTG GTGAACATGG TCAGCAAATT GCCCACCGAG ACGCCGTTCC ATGAGATCGG TCTGACGTAT GGCACCTTCA ACAAGAAGCG CACCACGTTC GATTTTGGCG GGCCGATTGA TGATCAGGGT GTTTATTCCT ATCGCCTGTC CGGGCTATAC GACGATGCCG ATGGCCAGAT CGAACACACC GAAACCCGTC GCCAGTCACT GGCCTCGGCG TTCACCTGGC GGCCCGACGA GGACACTTCG CTGACCCTGC TGGCCAATCT GCAGAGCGAT CCCAAGGGGG CTTCCTACGG ATCGATGCCG GCCTATGGTT CGGTGGTAAA AAGCCCGACC GGGCGGCACA TCGATTTCGA TTTCTATGAT GGCGAGAAGA ATTTCGAGAA GAGCGACCGT GAATATCACG CCGTCGGTTA TCTGTTCGAG CACCATCTGA ACGACGTCTG GACCTTGCGC CAGAACGCCC GCTATCTGCG CAGCGAAGGG GTTTACCGAA GCATCTACAA CGGCTGGGGC ACGTTGCAGC CTGACTATCG CACCTCCGAA CGCGCCACCA TCGCCACCGA TGTGAATCTG GATTCCTACA CCATCGATAA CCAGATGCAG GCCAATTTCG ACACCGGCCC GTTGCAGCAC ACGCTATTGC TGGGTGCGGA TTATCAGAAC ACCAGCACTG ATACCAAAGC GGGTTACGGC ATAGGGCCAA CGCTGGACAT TTTCGACCCG GTCTATGGCT CGCCTGTCGA GGTTCCAGCC TTTACCGAGT CGAGCACACA GCGTGATCAG CAGAAGGGCC TGTACCTGCA AGAGCAGTTG AAGTGGGACA AGTGGGTGCT GTTGATGGGC GGCCGTTACG ACTGGGCCGA GAGCAGCAAC AGTTCTACCA ACCTGACTTC AAGCACCAAG ACCCGGTCTT CGGCCGACAG CGAAGCGTTC ACCGGGCGTC TGGGATTGGT TTACCTGTTT GATAACGGCC TGGCGCCTTA CATCAGTTAT TCGGAATCCT TCGAGCCACA AAGCGGTACG GGGCTGGGCG GTGCGCTGTT CGATCCGACC GAGGGCACGC AATACGAGCT GGGTATCAAG TACCAGCCGC CCGGCAGCAA CAGCTTTATC ACGGCGGCGA TTTTCGACCT GCGTCGTTCC AATGTGCTGA GCCAGGACCC CAATGGCAAC CTGTGCAACG GCGCGGTCTG TCAGGTGCAG ACCGGTGAAG TGCAATCGCG TGGTTTCGAG CTGGAAGGCA AGGCCAGTTT GAACGACAAC CTGGACATCA CTGCGGCGTA CGCCTATCTC GACAACCGGG TGACCAAGTC CAGCAACGTG GTCAATGTCA CGTCCGGCAT CATCGGCGAT GCGCCAGGTC CTGATCTGAC CACCAAAGGC ACCACGGCAC CGGCCATTCC ACGCCACACC GCCTCGGCGT GGGTGGATTA CACGGTTCAT GACGGGCAGT TGAAAGGTGC TGGTGTGGGT GGCGGCGCAC GTTATGTGGG CGCGAGTTGG GGGGATGAAG CCAACACCCT GAAGGTGCCG GGTTACACGC TGTTCGATGC CGCCGTGCAT TACGACATTC CGAACATCAG CAACGCGATG GACAACCTGC GCCTGGCGCT GAATGTCACC AATCTCGCCA ACAAGGAGTA CGTTGCGTCG TGCTACACCT ACTCATGGTG CTGGTACGGC TCGCAACGCA CTGTGCAGGC GAGTGCTACG TATCGGTGGT GA
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Protein sequence | MPRPARSLHP LALAVLMACA AMPSHAAQPS SPNADVSTVR SFSIPAGDLS QVLNTFSEQA GLALAFDPAL TRGKRSPGLQ GQYGTDEAIA RLLSGSGLRA TALSANRYRI ETAPEAVEGS LELQATTISG ASRLETATGP VTGYVATRGL SATKTDTALI ETPQSISVVT KDQMKAQGAE NLSQMLRYSA AVVPETRGST ASRLDMLSIR GFSPALYLDG LRMPDNRDAA PQKDVFDLER VEVLRGPASV LYGQASPSGV VNMVSKLPTE TPFHEIGLTY GTFNKKRTTF DFGGPIDDQG VYSYRLSGLY DDADGQIEHT ETRRQSLASA FTWRPDEDTS LTLLANLQSD PKGASYGSMP AYGSVVKSPT GRHIDFDFYD GEKNFEKSDR EYHAVGYLFE HHLNDVWTLR QNARYLRSEG VYRSIYNGWG TLQPDYRTSE RATIATDVNL DSYTIDNQMQ ANFDTGPLQH TLLLGADYQN TSTDTKAGYG IGPTLDIFDP VYGSPVEVPA FTESSTQRDQ QKGLYLQEQL KWDKWVLLMG GRYDWAESSN SSTNLTSSTK TRSSADSEAF TGRLGLVYLF DNGLAPYISY SESFEPQSGT GLGGALFDPT EGTQYELGIK YQPPGSNSFI TAAIFDLRRS NVLSQDPNGN LCNGAVCQVQ TGEVQSRGFE LEGKASLNDN LDITAAYAYL DNRVTKSSNV VNVTSGIIGD APGPDLTTKG TTAPAIPRHT ASAWVDYTVH DGQLKGAGVG GGARYVGASW GDEANTLKVP GYTLFDAAVH YDIPNISNAM DNLRLALNVT NLANKEYVAS CYTYSWCWYG SQRTVQASAT YRW
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