| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1148 |
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| Symbol | alkK |
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| ID | 1182784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1257917 |
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| End bp | 1259599 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392527 |
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| Product | medium-chain-fatty-acid--CoA ligase |
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| Protein accession | NP_790982 |
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| Protein GI | 28868363 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTACAGA CTCGCGTTCT TCCGCCTGCC GATGGCGCTT ACCAGTACCC TCTGCTGATC
AAAAGCCTGC TGTTATCCGG CAGTCGCTAT GAAAAGACGC GTGAGATTAT TTACCGTGAC
TCCGTCCGCT ACAGCTACCC GACCCTTAAA GAGCGCATCT GCCGTCTGGC CAATGTGCTG
ACGGCTGCCG GTGTAAAGGC CGGTGACACG GTGGCGGTCA TGGACTGGGA CAGTCACCGT
TATCTGGAAT GCATGTTTGC CATCCCGATG ATTGGCGCGG TGATTCACAC CGTGAACGTC
CGGCTTTCCC CCGAGCAGAT CGCTTACACC ATCAATCATG CCGATGACCG CCTGGTGCTG
GTCAACAGCG ATTTCACGGG CCTTTATCAG GCCATGGCCG GACACCTGAC CACCGTCGAA
AAGACCCTGT TGCTGACGGA CCTGCCCGAC AAGACCGCTG ACTTGCCCAA CCTTGTCGGC
GAGTATGAGA CGCTGTTGGC GGCAGCTAGC CCCGAATACG AATTCGAGGA TTTCGACGAA
AACTCGGTCG CCACCATGTT TTACACCACC GGCACCACCG GCAACCCCAA AGGGGTCTAT
TTCACCCACC GCCAGCTGGT GCTGCACACC CTTGGCCTGT CGGCCATCAT GGGCTGCATC
GACAGCACGC GTCTGCTCGG CACTAATGAC GTCTACATGC CCATCACGCC GATGTTCCAT
GTGCACGCCT GGGGCATTCC GTATGCCGCG ACCATGCTGG GGCTCAAGCA GGTCTATCCC
GGTCGCTACG AGCCCGAACT GCTGGTGGAG TTGTGGCGCC GGGAGAAGGT CACGTTCTCG
CATTGCGTAC CGACCATCCT GCAAATGCTG CTCAACGCAA AGTCGGCTCA GGATGTCGAT
TTTGGCGGCT GGAAAATCGT CATTGGCGGC AGCGCACTGA ACCGCAGCCT GTATCAGGCG
GCAAAAGCCA AGGGCATCCA GCTCACCGCC GCCTATGGCA TGTCGGAAAC CGGACCGTTG
ATTTCGGTTG CGCACATCAA CGAAGAGCTG AAAGCCGGCA GCGAAGACGA GCAGATCACC
TACCGGATCA AGGCCGGCGT GCCAGGAATG CTGGTAGACG CCGCGATCAT CGATCAGCAG
GGCAACTTTT TGCCGGCCGA TGGCGAAACC CAGGGCGAAC TGGTCTTGCG CGCACCCTGG
CTGACTGAAA GCTACTACCG TGAGCCGGAA AAAGGTGCCG AACTGTGGGC GGGCGGCTGG
CTGCGCACCG GCGATGTCGC GACGCTGGAT GACATGGGGT TCATCGATAT TCGTGACCGC
ATCAAGGACG TGATCAAGAC CGGCGGCGAG TGGATTTCTT CGCTGGAACT CGAAGACCTG
TGCAGCAGGC ACCCGGCCGT TCGCGAAGTG GCGGTGGTCG GCATTGCTGA TCCGCAATGG
GGCGAGCGGC CGTTTGCCTT GCTGGTGATC CGCGAAGGTC ATCCGTTCGA TGCAAAGGAA
TTGAAGGAGC ATCTCAAGCC ATTCGTCGAG CAAGGTCACA TCAATAAGTG GGCGATTCCC
AGCCAGATCG CGCTTGTTAC CGAAATTCCC AAGACCAGCG TCGGCAAACT CGACAAGAAG
CGCATGCGTC TGGACATCGT GGAATGGCAA AACAGCAACA GCACGTTCCT TTCCACGCTT
TGA
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| Protein sequence | MLQTRVLPPA DGAYQYPLLI KSLLLSGSRY EKTREIIYRD SVRYSYPTLK ERICRLANVL
TAAGVKAGDT VAVMDWDSHR YLECMFAIPM IGAVIHTVNV RLSPEQIAYT INHADDRLVL
VNSDFTGLYQ AMAGHLTTVE KTLLLTDLPD KTADLPNLVG EYETLLAAAS PEYEFEDFDE
NSVATMFYTT GTTGNPKGVY FTHRQLVLHT LGLSAIMGCI DSTRLLGTND VYMPITPMFH
VHAWGIPYAA TMLGLKQVYP GRYEPELLVE LWRREKVTFS HCVPTILQML LNAKSAQDVD
FGGWKIVIGG SALNRSLYQA AKAKGIQLTA AYGMSETGPL ISVAHINEEL KAGSEDEQIT
YRIKAGVPGM LVDAAIIDQQ GNFLPADGET QGELVLRAPW LTESYYREPE KGAELWAGGW
LRTGDVATLD DMGFIDIRDR IKDVIKTGGE WISSLELEDL CSRHPAVREV AVVGIADPQW
GERPFALLVI REGHPFDAKE LKEHLKPFVE QGHINKWAIP SQIALVTEIP KTSVGKLDKK
RMRLDIVEWQ NSNSTFLSTL
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