| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1119 |
|---|
| Symbol | |
|---|
| ID | 1182755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1232891 |
|---|
| End bp | 1233679 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637392498 |
|---|
| Product | oxidoreductase, short chain dehydrogenase/reductase family |
|---|
| Protein accession | NP_790953 |
|---|
| Protein GI | 28868334 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTC CCGTTGCACG ACGCATATGG TTGACCGGGG CAAGCAGCGG CATAGGCCTG
GCGCTGGCCA AGGAATTGCT CGCTGCCGGA CATCGGTTGG CCTTGACCGC CAGAACCCTG
GAGCCCCTGC AGAACCTGGC CGCCAGTCAT CCGCAGCAGG TCTTGCTGGT CACCGGCGAC
ATCACCGACG GCCTGCAAGT GACCGCCATG GCCGACCGCA TCGCCCAGGA ATGGGGGGCG
CTGGATACCG CGATCCTCAA TGCGGGCACC TGTGAATACA TCGACACCCG CCACTTCGAG
GCGGCGATGG TCGAGCGCGT CGTGCGCACC AACCTGCTCG CCAGCAGTTA CTGCATTCAG
GAAGCCCTGC CGCTGTTGCG CAAGGGCAAT CAGCCGCATC TGGTCGGCGT GGCCAGCGCC
GTCACCTTCC TGGCACTGCC CCGCGCAGAA GCCTACGGCG CCTCGAAGGC TGGCCTGCGT
TACCTGTTTG AAGCCCTGCG CATTGATCTG GCCAGCGAAA ATATTGACGT GACCATTGTC
AGCCCAGGGT TTGTCGATAC ACCCCTGACG CAGAAAAACG ATTTCCCTAT GCCGATGCGC
TGGCCCGTTG AAAAAGCTGC CCGCTACATT GCCGATAACC TCAAGCGTGT GCGACGACCG
CTTGAAATTG CCTTCCCGAC GGCTTTCATC CTCAGTATGA AACTGCTGGC CCTGCTTCCG
GTGCGCGTCA GATTCGCCAT CGGCAAGCGC ATGGCCCGTA GCGAAACGGG CCATAAGGAC
ACTCAATGA
|
|---|
| Protein sequence | MNTPVARRIW LTGASSGIGL ALAKELLAAG HRLALTARTL EPLQNLAASH PQQVLLVTGD
ITDGLQVTAM ADRIAQEWGA LDTAILNAGT CEYIDTRHFE AAMVERVVRT NLLASSYCIQ
EALPLLRKGN QPHLVGVASA VTFLALPRAE AYGASKAGLR YLFEALRIDL ASENIDVTIV
SPGFVDTPLT QKNDFPMPMR WPVEKAARYI ADNLKRVRRP LEIAFPTAFI LSMKLLALLP
VRVRFAIGKR MARSETGHKD TQ
|
|---|
| |