| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1087 |
|---|
| Symbol | |
|---|
| ID | 1182722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1193259 |
|---|
| End bp | 1194527 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637392465 |
|---|
| Product | type I restriction-modification system, S subunit |
|---|
| Protein accession | NP_790921 |
|---|
| Protein GI | 28868302 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0732] Restriction endonuclease S subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.247708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTG AGTGGCGCGA AATTACGTTT GGAGATTTCG TTGCTATCCA ACGTGGTCAT
GATCTGCCGG ATCAAAATCG AAAATTGGGA TCAGTGCCCA TTCTTGGCTC ATTTGGTATT
ACTGGTTATC ACGATACCGT CAAAGCCAAA GGCCCCGGCG TGACAATTGG CCGAAGTGGC
GCATCCTTTG GTGTGGCGGC ATATACGGAT CAGGATTACT GGCCGTTGAA TACTGCGCTA
TATGTCACCG ACTTTAAGGG GAACCATCCA AAGTTTGTTT TTTACTTCAT GAGGGTATTC
GACTTTTCGG GGTTTAACTC TGGTAGCGCT CAACCGTCTT TGAATAGGAA TAACCTGTAC
CCGGTATCTA TTCGTGTACC TCAGCCAAAT GAGCAAATGG CTATTTCCAA GTTGCTCGCT
GCCCTTGACG ACCGCATCGC CCTGCTAGTC GAAACCAACA CCACCCTGGA ATCCATAGCC
CAGGCGCTGT TCAAATCCTG GTTTGTCGAT TTCGATCCGG TGCGGGCCAA GGTCGCAGGG
CTTGAGCCGG AGGGGATGGA TGCGGCCACG GCGGCGCTGT TTCCCGACAA TTTTGAAGAG
TCCGAGTTGG GGTTGGTACC AACGGGGTGG ATCATAGAAA GTATTGCTAA TGTGGCAGAA
GTCGTTAAAG GTAAGTCTTA CAAAAGTACG GAACTTGCAG AGTCGCATCA CACAGCCCTC
GTCACCCTTA AGTCTTTTTC TCGTGGTGGC GGTTTCCGCC TCGATGGCTT CAAGCCATAC
ACTGGAAGCT ATAAGCAAAC ACAGGTGGTT GTTCCAGGAG ATCTAATAAT TGCCTATACC
GACGTTACAC AAGCTGCGGA GCTGATCGGT AAACCCGCAA TTGTTGTCGG GGTTGAGGAT
TATCAAACGC TTGTTGCTTC TCTAGATGTC GGAATTGTAA GGACAAACAA CCCAAGGGTT
AGCCGTCAGT ATTTGTACGG CTTATTTCGC ACCGAGCTGT TCCAGAGCCA TACTTTCGCA
CATACGTCGG GCACGACGGT TTTGCACTTG GCCAAGGATG GTGTCGGTTC CTACAAGTTC
GCGTGTCCGT CGCAAGAACT GGTACAGTGT TTCTCTGCTG TGACTGAAAC CCTTTCTGAG
CGCTGCCAGA ACAACATCGA TCAAATGCGA ACCCTCACTC AGCTTCGCGA CACTCTACTG
CCGCGCTTGA TCTCCGGCCA GCTGCGCCTG CCGGAAGCTG AGGCGCAGAT CGAAGCGGTG
TGTGCATGA
|
|---|
| Protein sequence | MSSEWREITF GDFVAIQRGH DLPDQNRKLG SVPILGSFGI TGYHDTVKAK GPGVTIGRSG
ASFGVAAYTD QDYWPLNTAL YVTDFKGNHP KFVFYFMRVF DFSGFNSGSA QPSLNRNNLY
PVSIRVPQPN EQMAISKLLA ALDDRIALLV ETNTTLESIA QALFKSWFVD FDPVRAKVAG
LEPEGMDAAT AALFPDNFEE SELGLVPTGW IIESIANVAE VVKGKSYKST ELAESHHTAL
VTLKSFSRGG GFRLDGFKPY TGSYKQTQVV VPGDLIIAYT DVTQAAELIG KPAIVVGVED
YQTLVASLDV GIVRTNNPRV SRQYLYGLFR TELFQSHTFA HTSGTTVLHL AKDGVGSYKF
ACPSQELVQC FSAVTETLSE RCQNNIDQMR TLTQLRDTLL PRLISGQLRL PEAEAQIEAV
CA
|
|---|
| |